Pcog018173.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- retn
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000089.1:103274-110367[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-17 3.4e-13 52.1 0.1 29 89 4 62 1 62 0.93 2 2 2.4 3.8e+04 -2.5 0.0 26 38 202 214 163 228 0.65
Sequence Information
- Coding Sequence
- ATGGCCAAATCGGTGCTGGATCTCTACGAGCTGTATAATTTGGTCATCGCTAGAGGAGGATTAGTGGATGTGATCAACAAGAAGTTATGGCAGGAGATCATCAAAGGATTGCACTTACCTTCGAGTATTACATCGGCAGCTTTCACACTTCGGACACAATACATGAAATATTTATATCCATATGAATGCGAGAAAAGGCGGCTAAGCACACCAGCAGAACTCCAAGCAGCAATCGACGGCAACAGAAGAGAAGGCCGCCGCAGCAGCTACGGCCAATACGACTCAGTACAAAGATCTCCAAACCCAGCACAAATGTCCCCACTATCATTGGTTTCACAGCAACAGCAACACCTCGCAGCCAGGATGAACAGCGTGATGAGCGGCGGAATTAGCCTCCACAACGGCGCCCACCACCCCAGCCACCCGGCCCCGATGGTCCAACCCCTGAACACGGGCCCCCTGCCCGGACTAGCCCCCAGTGAATTCGAGGCGAGGATGATGGAGTACGTGAAGCTTTTGAATAAGGAGATGAGGAGTTCGGCGTCGACGCCGCCCAGGCACGGGGATTCGTCACCGCCGAGCGCGACGTCGCCTCTGAACCCGCTGGAGATGTCGCGGATGACGCTGTGGAATTTATATAATAACAACCAGCCGCAGATTGAGCCGCAGAAGGAGCCGCTGAATCTGACGGAGACCTCACCGCCGGCGGTCAAGCGCGAGCCAGAGTTGAGGGAATCCCCGCCTCCCGCGAAGAAGTTTATTACGGAGGAGGATGAGAAACCTAAAGCGCAATCACCTTCAACTCACATTAAAATCAATAGTCGAGGCGATTCTCGCACTGGTGATAATTCATTAGTAGTGAGTATGGAACTAAACGGTGTGACATACCAAGGCGTCCTCTTCCCGCAAACATCATCATCAGGACGGACTGCGATCGCGTCGTAA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSVQRSPNPAQMSPLSLVSQQQQHLAARMNSVMSGGISLHNGAHHPSHPAPMVQPLNTGPLPGLAPSEFEARMMEYVKLLNKEMRSSASTPPRHGDSSPPSATSPLNPLEMSRMTLWNLYNNNQPQIEPQKEPLNLTETSPPAVKREPELRESPPPAKKFITEEDEKPKAQSPSTHIKINSRGDSRTGDNSLVVSMELNGVTYQGVLFPQTSSSGRTAIAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01400147; iTF_01196490; iTF_01185963; iTF_01370812; iTF_00788308; iTF_01294744; iTF_00641181; iTF_00920445;
- 90% Identity
- iTF_01196490;
- 80% Identity
- -