Hnig004549.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- retn
- Assembly
- GCA_963082805.1
- Location
- OY720160.1:1817649-1823999[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-20 6.7e-17 62.8 0.1 16 89 40 111 13 111 0.94 2 2 3.5 2e+04 -2.8 0.0 26 38 251 263 211 268 0.60
Sequence Information
- Coding Sequence
- ATGGAAACTCTTCAAATCCGTCCTTGCATAGAGTACCTAAACAAGCTCGAACGTTGGGGTAAGGTCGCCCATACGAAGAATAAAATCATCTTGACGTGGGGTAAAACAAGTCCATATCGGGGAACGCCTATAAATCGATTGCCGATAATGGCAAAGTCAGTATTGGACCTTTACGAATTGTACAACTTGGTGATAGCACGAGGGGGACTAGTCGAtgtaattaacaaaaaactcTGGCAGGAGATCATTAAGGGGCTTCATCTTCCTTCTTCTATCACATCCGCTGCCTTCACATTAAGAACACAgtACATGAAATACCTCTACCCATACGAATGTGAAAAACGTCGTCTTTCCACACCAGCCGAGCTCCAAGCAGCGATTGACGGTAACCGCCGTGAAGGTCGCCGAAGTAGTTACGGCCAATACGACAACATCCAACGATCTCCAATTCCTTCTTCACAAATGTCCCCCCTTTCCTTAGTTTCCCAACACCAACAACTAACCGCACGTATGAACTCCGTCATGAGCGGTGGTATTAGTTTACATAACGGTGCCCATCATCCCAGTCATCCACAACCCATGGGACAACCTTTAAATGGTGGTCCCATTCCCGGATTAGCTCCAAGCGAATTCGAAGCTCGCATGATGGAATACGTAAAGTTATTGAACAAGGAGATGAGAAATAGTGCGGCGACTCCACCAAGACAAGGAGAATCTTCACCCCCAAGTGCTACGTCACCCCTTAATCCGTTAGAAATGTCCCGTATGACCTTGTGGAATTTATATAACAATAATCAACTTCAAAATGAACCGCAAAAGGAAGCCCTGAATCTTTCGGAAGCTGCCCCGCCACATTTACTCCCACCACTACAGAACCTTGTCGTTAAAAGGGAGCCTGAAAGGGAATGTTCTCCACCTGCCAAAAAGTTCATCAAGGATGAGGACGAGCACAAACATGTTACAGCTAGTACACATATTAAGATTAATAGTAGAGGTAAgtgttttttgatatttattttttgtgaccGCTGA
- Protein Sequence
- METLQIRPCIEYLNKLERWGKVAHTKNKIILTWGKTSPYRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDNIQRSPIPSSQMSPLSLVSQHQQLTARMNSVMSGGISLHNGAHHPSHPQPMGQPLNGGPIPGLAPSEFEARMMEYVKLLNKEMRNSAATPPRQGESSPPSATSPLNPLEMSRMTLWNLYNNNQLQNEPQKEALNLSEAAPPHLLPPLQNLVVKREPERECSPPAKKFIKDEDEHKHVTASTHIKINSRGKCFLIFIFCDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01184290;
- 90% Identity
- -
- 80% Identity
- -