Rgig018897.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- retn
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000067.1:1558516-1562084[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-22 1e-18 68.3 0.0 10 89 43 120 40 120 0.95 2 2 3.6 1.4e+04 -2.7 0.0 25 38 259 272 219 275 0.55
Sequence Information
- Coding Sequence
- ATGTTGAAGACCGGTCGTCTTCTTCCAATATCGTTCGGTGGGTTACCGAACGATACGGTAGATGAATCTGCTCGTGTCACATCACTAAAAGAACTCGAGATGATGGGCAAGCGCGAAACGGCATCCAAAAATTTCCACGAGTCGGTCGGAACTCCCATTAACCGGTTGCCGATAATGGCGAAATCGGTTTTGGACCTTTACGAATTGTATAATTTGGTGATAGCGCGGGGAGGACTAGTCGACGTAATTAACAAGAAATTATGGCAGGAGATTATTAAGGGCCTTCATCTGCCATCTTCAATTACTTCCGCGGCGTTTACGTTGCGAACGCAGTACATGAAATACCTTTATCCGTACGAATGCGATAAGCGTCGTCTATCGACACCATCTGAACTTCAAGCAGCGATCGATGGTAATCGACGAGAAGGTCGTAGAAGTAGTTACGGACAGTACGACAACATTCAAAGATCTCCAATACCGTCTTCGCAAATGTCTCCGTTATCGTTAGTTTCTCAACATCAACAATTAACGGCGCGCATGAACTCCGTAATGAGCGGCGGAATAAGTTTGCACAACGGCGCCCACCACCCGAGCCATCCGCAACCCATGGGCCAACCGTTAAATGGTGGCCCGATACCCGGATTAGCGCCGAGCGAATTCGAAGCTCGCATGATGGAAtacgttaaattattaaataaggaAATGCGAAGCTCCGCCGCCACCCCTCCGCGACAAGGAGAAACGTCTCCTCCGAGCGCGACGTCTCCATTAAATCATCTGGAAATGTCGCGCATGACTTTGTGGAAtctatacaataataatcaattgCAACACGAACCTCAGAAGGAAGCGCTCAATCTATCAGATCCAGCACCTCATCTCCCTCCGCCCCAACAGCAGCCGCCGATAATCAAAAGAGAACCCGAACGGGAGTGTTCGCCGCCTCCAAAGAAAATCGTAAAGGAGGAAGACGAACACCGCCACGTCGTAACTAGTACacatatcaaaattaacaGTAGAGGGGATTCCCGTAACGGGGATAATTCCTTGGTCGTAAGTATGGAACTCAACGGAATTATGTATCAAGGGGTTTTATTTGCGCAATCTCCTCCACCCAGTAGAACTGCATTAGCTTCGTAA
- Protein Sequence
- MLKTGRLLPISFGGLPNDTVDESARVTSLKELEMMGKRETASKNFHESVGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRRLSTPSELQAAIDGNRREGRRSSYGQYDNIQRSPIPSSQMSPLSLVSQHQQLTARMNSVMSGGISLHNGAHHPSHPQPMGQPLNGGPIPGLAPSEFEARMMEYVKLLNKEMRSSAATPPRQGETSPPSATSPLNHLEMSRMTLWNLYNNNQLQHEPQKEALNLSDPAPHLPPPQQQPPIIKREPERECSPPPKKIVKEEDEHRHVVTSTHIKINSRGDSRNGDNSLVVSMELNGIMYQGVLFAQSPPPSRTALAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01184290;
- 90% Identity
- iTF_00977107;
- 80% Identity
- -