Palb001906.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:11610185-11611672[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 81 4.3 0.2 21 43 205 227 198 232 0.83 2 10 0.0037 30 5.7 0.3 21 49 233 260 226 264 0.81 3 10 0.00059 4.8 8.2 0.3 24 47 263 286 256 292 0.81 4 10 0.083 6.8e+02 1.3 0.1 21 47 288 314 284 319 0.84 5 10 0.0018 14 6.7 0.1 21 45 316 340 311 347 0.88 6 10 0.49 4e+03 -1.1 0.1 21 31 344 354 340 370 0.76 7 10 0.00068 5.5 8.0 0.3 21 46 372 397 356 403 0.82 8 10 0.082 6.6e+02 1.4 0.1 21 43 400 422 396 427 0.85 9 10 1.8e-05 0.15 13.1 0.1 21 52 428 459 410 461 0.84 10 10 1.7e-05 0.14 13.2 0.7 23 48 458 483 454 485 0.91
Sequence Information
- Coding Sequence
- ATGGCTGGGAAAATGCTCGAAATGAAGAGCATCCTTCTCGCAGATTTCACAGCAGACAGCTGTAGCAGTTTTTCAGTTGGAGACGATAGCCACTATTCGGATTTTCTGCTTACAGATGACATGATTAAGAAGGAGCCCGAGTTCATCATTAACGAGGACGAAGCCGAAGGTGAGAAAATTCGGAGCTTCTTAAAGAAAACTGCGATTGACGAGAACGATAGGAAGAATTTACAGTGGCATAATTGTATTATATGCGAGGAACGTTTCCTCAACATCGAGGATTTGTCCCTTCATGTCCAAGGACACATAAAAAAGGAGAAGGTGGATGACGTCGAGAAGGCGCTTAATCACCGGCAAGCACCGAAGACGCAGCACACAGGATTTTCGCGCGAGGAGTGCTTCAGggattatgttaaaattaatgtcaACTTGGACGGTGATCCGACGTATTTATGTAAGTTGTGCAACGGTAAGCCCTTCACAAAGCTCATAGCCATCCAGAACCATATGCGTATTCACCAGAGTCCTATCTACAAAGATCGAACATGTCACGTTTGTAAAAGGAATTTCCTAAGAAGGGACACGCTGATGGTCCACCTGAGGACCCACAGTCATGAACGACCCTATAAATGCGATATTTGCAGTGCAACATTCGCTCATTCGAGCTCCTTGGTGGCCCATAAGCGGATCCATTCTGGGGAGAGGCCCTACATATGCGATATCTGTCACCAGTCCTTCAGGGAATCTGGGCAAATGTCGACGCACAGAAGAacacattttgataaaacccTTAAATGCCCTCAGTGCAATCAGTTCTATGCATCTTCGAAAAATCTTAGAGCTCATCTTCGAACGCATACCGGAGAGAAGCCCTATAATTGCATGCATTGCGGGAAGTGTTTCCGAACATCCACAGCACTTACTTTGCACATTCGAGTTCATACGGGCGAGAAGCCATTTAAATGCCCTCAGTGTCCCTATGCCACGAAACAGTCTGGATCCCTTAAGTCTCACATCAGGACCCACACGGGAGAGCGCCCCTTTAAGTGTGATATTTGCGAACGTTCCTATACTGAGAAGAAGCGCCTTATCACCCACTACAGGACTCATACGGGCGAACGACCCTACAAATGTGAGTACTGCGAATCCGCATTCATTCGAAGTGATAATCTGCGCAGTCACCTTAGGACCCACACCGGAGAGAAACCATTCAAATGCCCCGACTGTCCAAAAGCTTTTGCCCAAAAGACAACATTGAAGGCCCACGAAAAAGTCCATTCCGGGGAAAAGCCGTACCCTTGCCCGTTCTGCGAGCAGGCATTCCGACAATCGGGAACTTTACAGACGCATATGCGAATCCATGACAATCTGAAGCCATTCCATTGTCAGCTGTGCGACAGAAGCTTCCGACAGACTAGCAACCTCCGACGGCACATAGCAATTGACCACAACATGGTAATTGAGCAGCAGCCCTTCTATAGTCACTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSVGDDSHYSDFLLTDDMIKKEPEFIINEDEAEGEKIRSFLKKTAIDENDRKNLQWHNCIICEERFLNIEDLSLHVQGHIKKEKVDDVEKALNHRQAPKTQHTGFSREECFRDYVKINVNLDGDPTYLCKLCNGKPFTKLIAIQNHMRIHQSPIYKDRTCHVCKRNFLRRDTLMVHLRTHSHERPYKCDICSATFAHSSSLVAHKRIHSGERPYICDICHQSFRESGQMSTHRRTHFDKTLKCPQCNQFYASSKNLRAHLRTHTGEKPYNCMHCGKCFRTSTALTLHIRVHTGEKPFKCPQCPYATKQSGSLKSHIRTHTGERPFKCDICERSYTEKKRLITHYRTHTGERPYKCEYCESAFIRSDNLRSHLRTHTGEKPFKCPDCPKAFAQKTTLKAHEKVHSGEKPYPCPFCEQAFRQSGTLQTHMRIHDNLKPFHCQLCDRSFRQTSNLRRHIAIDHNMVIEQQPFYSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_01050052; iTF_00628549; iTF_00717958; iTF_00718188; iTF_01049836; iTF_00628782; iTF_01183982; iTF_01461331; iTF_00937687; iTF_01461563; iTF_00937472;
- 80% Identity
- iTF_01183982;