Ncya011028.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384545.1:19816004-19817491[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 1.7e+02 3.2 0.2 17 43 202 227 198 232 0.82 2 10 0.00057 9.3 7.3 0.3 21 49 233 260 227 264 0.81 3 10 0.0004 6.6 7.8 0.2 24 47 263 286 256 292 0.80 4 10 0.051 8.3e+02 1.1 0.0 21 47 288 314 284 319 0.84 5 10 0.00019 3 8.9 0.1 21 45 316 340 311 347 0.89 6 10 0.24 4e+03 -1.1 0.1 21 31 344 354 340 370 0.76 7 10 0.00027 4.4 8.4 0.1 21 47 372 398 357 404 0.82 8 10 0.041 6.6e+02 1.4 0.0 21 43 400 422 396 427 0.85 9 10 1.1e-05 0.17 12.9 0.0 21 52 428 459 410 460 0.85 10 10 4.9e-07 0.008 17.1 0.6 22 48 457 483 452 485 0.90
Sequence Information
- Coding Sequence
- ATGGCTGGGAAAATGCTTGAGATGAAAAGTATCCTTCTTGCGGACTTCACAGCGGACAGTTGTAGCAGCTTTTCGGTTGGGGAGGACAGCCAATACTCTGACTTCATGCTCACGGAGGATATGATCAAGAAGGAGCCCGAATTTATCATCGAGGAGGACGAGGCAGAGGGTGAGAAAATTCGCAGCTTCCTGAAGAAGACTGCGATTGATGAGAACGACAGAAAGAACTTAAAATGGCATAACTGTATTATATGTGAGGAGCGCTTCCTCAACATCGAGGACCTCTCTATACATGTTCAAGGGCATATAAAGAAGGAAAGAGTGGACGACGTGGAGAAGGAGCTCAATCACCGGCAGGCACCGAAAACCCAACACACTGGCTTCTCCCGTGAGGAATGCTTCCGGGACTATGTCAAAATTAATGTCAATTTGGACGGGGATCCAACGTATTTATGCAAATTGTGTAATGGTAAGCCCTTCACGAAGCTCATAGCCATCCAGAACCATATGAGGATTCACCAGAATCCCATTTACAAAGATCGAACCTGTCACGTTTGTAAGAGGACCTTTCTAAGGCGGGACACTCTGATGGTTCACCTGAGAACACACAGTCAGGAGAGACCTTATAAGTGCGATATGTGCACGGCAACATTTGCACACTCCAGCTCCTTGGTATCCCACAAGCGAATCCACTCAGGGGAACGGCCTTACACGTGCGACGTTTGTCACCAATCCTTCCGGGAGTCTGGGCAAATGTCGGCTCATCGGAGGACACACTTCGACAAAACCTTGAAATGCCCTCAGTGCGACCAGTTTTATGCATCTTCGAAAAACCTACGAGCTCATTTGCGAACGCATACTGGGGAAAAACCTTATAAGTGCATGCATTGTGGAAAGACTTTTCGGACATCCACTGCGCTCACTCTGCATATTCGAGTGCATACGGGAGAGAAGCCATTCAAATGCCCTCATTGCGCCTATGCGACGAAGCAGTCTGGATCGCTTAAGTCTCACCTCAGGACCCACACGGGTGAGCGGCCTTTCAAGTGCGATATTTGCGAACGTTCCTACACCGAGAAGAAGCGCCTTATAACACATTACAGGACACACACGGGCGAACGGCCTTACAAATGTGACTACTGCGATTCTGCATTCATCCGCAGCGACAATCTTCGCAGCCATCTCAGGACTCATACAGGAGAAAAGCCGTTCAAGTGCCCTGATTGCCCAAAGGCTTTCGCCCAAAAGACAACATTGAAGGCCCACGAAAAGGTCCATTCTGGAGAAAAGCCCTTTCCCTGCCCGTTCTGCGATCAGTCGTTTCGCCAGTCTGGCACCCTCCAAACGCATATGCGAATTCACGACAATCAGAAACCATTCCATTGTCAGCTGTGCGACAAGAGCTTTCGGCAATCAAGCAACCTGCGGCGGCACATAACTATTGACCACAACATGGTAGTGGATGAGGAGTCCTTCTATAGTCACTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSVGEDSQYSDFMLTEDMIKKEPEFIIEEDEAEGEKIRSFLKKTAIDENDRKNLKWHNCIICEERFLNIEDLSIHVQGHIKKERVDDVEKELNHRQAPKTQHTGFSREECFRDYVKINVNLDGDPTYLCKLCNGKPFTKLIAIQNHMRIHQNPIYKDRTCHVCKRTFLRRDTLMVHLRTHSQERPYKCDMCTATFAHSSSLVSHKRIHSGERPYTCDVCHQSFRESGQMSAHRRTHFDKTLKCPQCDQFYASSKNLRAHLRTHTGEKPYKCMHCGKTFRTSTALTLHIRVHTGEKPFKCPHCAYATKQSGSLKSHLRTHTGERPFKCDICERSYTEKKRLITHYRTHTGERPYKCDYCDSAFIRSDNLRSHLRTHTGEKPFKCPDCPKAFAQKTTLKAHEKVHSGEKPFPCPFCDQSFRQSGTLQTHMRIHDNQKPFHCQLCDKSFRQSSNLRRHITIDHNMVVDEESFYSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_01184194;
- 80% Identity
- iTF_01049836;