Eruf035793.1
Basic Information
- Insect
- Eutolmus rufibarbis
- Gene Symbol
- -
- Assembly
- GCA_963920795.1
- Location
- OY987209.1:17935945-17937432[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.03 2.4e+02 3.1 0.2 17 43 202 227 198 232 0.82 2 10 0.005 41 5.5 0.3 21 49 233 260 228 264 0.81 3 10 0.0009 7.3 7.9 0.2 22 47 261 286 254 292 0.80 4 10 0.1 8.4e+02 1.3 0.1 21 47 288 314 284 319 0.84 5 10 0.0023 18 6.7 0.1 21 45 316 340 312 347 0.88 6 10 0.58 4.7e+03 -1.1 0.2 21 31 344 354 339 371 0.76 7 10 0.00078 6.3 8.1 0.2 21 47 372 398 357 404 0.82 8 10 0.1 8.3e+02 1.4 0.1 21 43 400 422 396 427 0.85 9 10 2.9e-05 0.23 12.7 0.1 21 52 428 459 418 460 0.86 10 10 2e-05 0.16 13.2 0.6 23 48 458 483 455 485 0.91
Sequence Information
- Coding Sequence
- ATGGCTGGGAAAATGCTCGAGATGAAGAGCATCCTTCTCGCTGACTTCACCGCAGACAGCTGTAGCAGTTTTTCAGTTGGGGACGATAGCCAATACTCGGATTTTCTGCTTACAGAAGACATGATCAAGAAGGAGCCCGAGTTCATCATCGACGAGGACGAGGCTGAAGGTGAGAAAATTCGGAGCTTCTTGAAGAAAACTGCGATTGACGAGAACGACAGAAAGAATTTACAGTGGCATAATTGTATCATATGCGAGGAGCGTTTCCTGAACATCGAGGACTTGTCCCTTCACGTCCAAGGACACATAAAGAAGGAGAAAGTGGACGACGACGAGAAAACGTTAAATCACCGGCAAGCACCGAAGACTCAGCACACAGGATTCTCGCGAGAGGAATGCTTCAGAGactatgttaaaattaatgtcaaTTTGGACGGGGATCCGACGTATTTATGTAAGTTGTGCAATGGTAAGCCCTTCACAAAGCTCATAGCTATCCAGAACCATATGCGTATCCACCAGAGCCCCATCTACAAGGACAGAACATGTCACGTTTGTAAGAGGACTTTCCTAAGAAGGGACACGCTGATGGTCCATCTGAGGACCCATAGTCAGGAACGACCGTATAAGTGCGATATGTGCAGTGCAACATTCGCTCACTCGAGCTCCTTGGTGGCCCATAAGCGGATCCATTCTGGAGAAAGGCCCTACATATGCGATATCTGCCATCAGTCCTTCAGGGAATCCGGACAAATGTCGACGCACCGAAGAACACACTTTGATAAAACCCTCAAATGCCCACAGTGCGATCAGTTCTATGCATCTTCAAAAAACCTTAGAGCGCATCTACGAACGCATACCGGGGAAAAGCCCTACAACTGCATGCACTGCGGAAAGTGTTTCCGAACGTCCACAGCACTTACTCTGCACATTCGAGTTCATACAGGAGAGAAGCCGTTCAAATGCCCTCAGTGTCCCTACGCGACGAAACAGTCCGGGTCCCTTAAGTCTCACATCAGGACCCACACAGGAGAGCGACCTTTCAAGTGCGATATTTGCGAACGTTCCTACACTGAAAAGAAGCGCCTTATCACCCACTACAGGACACACACGGGCGAACGACCCTATAAATGTGAGTACTGCGAATCCGCATTCATCCGGAGCGATAATCTGCGCAGCCACCTTAGAACTCACACCGGAGAGAAACCGTTCAAATGCCCAGACTGCCCAAAAGCCTTTGCCCAGAAGACAACCTTGAAGGCCCACGAAAAGGTTCATTCCGGAGAAAAGCCATACCCTTGCCCATTCTGCGAGCAGGCATTTCGCCAATCGGGAACCCTGCAGACGCATATGCGAATCCACGACAATCTGAAGCCATTCCATTGTCAGCTGTGCGATAGAAGCTTCCGGCAGACTAGCAACCTCCGACGGCACATAGCAATCGACCACAACATGGTGATTGAACAGCAGCCCTTCTATAGTCATTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSVGDDSQYSDFLLTEDMIKKEPEFIIDEDEAEGEKIRSFLKKTAIDENDRKNLQWHNCIICEERFLNIEDLSLHVQGHIKKEKVDDDEKTLNHRQAPKTQHTGFSREECFRDYVKINVNLDGDPTYLCKLCNGKPFTKLIAIQNHMRIHQSPIYKDRTCHVCKRTFLRRDTLMVHLRTHSQERPYKCDMCSATFAHSSSLVAHKRIHSGERPYICDICHQSFRESGQMSTHRRTHFDKTLKCPQCDQFYASSKNLRAHLRTHTGEKPYNCMHCGKCFRTSTALTLHIRVHTGEKPFKCPQCPYATKQSGSLKSHIRTHTGERPFKCDICERSYTEKKRLITHYRTHTGERPYKCEYCESAFIRSDNLRSHLRTHTGEKPFKCPDCPKAFAQKTTLKAHEKVHSGEKPYPCPFCEQAFRQSGTLQTHMRIHDNLKPFHCQLCDRSFRQTSNLRRHIAIDHNMVIEQQPFYSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_01184194;
- 80% Identity
- iTF_00717958;