Dtri012027.2
Basic Information
- Insect
- Dysmachus trigonus
- Gene Symbol
- -
- Assembly
- GCA_949715965.1
- Location
- OX454320.1:27564114-27565601[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.03 2.8e+02 3.1 0.1 17 43 202 227 198 232 0.82 2 9 0.0037 35 6.0 0.3 21 49 233 260 226 264 0.81 3 9 0.00074 7 8.2 0.4 23 47 262 286 255 292 0.80 4 9 0.29 2.8e+03 -0.1 0.0 21 45 288 312 284 315 0.87 5 9 0.0022 21 6.7 0.1 21 45 316 340 312 347 0.88 6 9 0.00065 6.1 8.4 0.1 21 47 372 398 356 404 0.82 7 9 0.1 9.6e+02 1.4 0.0 21 43 400 422 396 427 0.85 8 9 9.8e-07 0.0093 17.4 0.0 21 52 428 459 410 459 0.84 9 9 2.6e-06 0.024 16.1 0.8 21 48 456 483 452 485 0.92
Sequence Information
- Coding Sequence
- ATGGCTGGGAAAATGCTCGAGATGAAGAGCATCCTTCTGGCGGACTTCACAGCGgacagctgtagcagcttttcaGTCGGGGATGATAGCCAATACTCGGATTTTCTGCTAACAGACGACATGATCAAGAAGGAGCCCGAATTCATCATCAACGAGGACGAGGCAGAAGGTGAGAAAATTCGCAGTTTCTTGAAGAAAACTGCAATTGACGACAACGACAGAAAGAATTTAAAGTGGCATAATTGTATTATATGCGAGGAGCGCTTCCTTAATATCGAAGACTTGTCCCTTCATGTCCAAGGGCATATAAAGAAGGAGAAGGTGGACGACGTCGAGAAGGCGCTTAATCATCGGCAGGCACCGAAGACCCAACACACAGGTTTCTCGCGTGAGGAATGCTTCAGGGACTATGTTAAAATTAACGTCAATTTAGACGGCGATCCAACGTATTTATGTAAGTTGTGCAATGGTAAGCCTTTCACAAAGCTTATAGCCATCCAGAATCACATGCGTATCCACCAAAGTCCCATCTACAAGGACAGAACATGTCACGTTTGTAAAAGGACCTTCCTAAGAAGAGACACGCTAATGGTTCACCTGAGGACACACAGTCAAGAACGACCCTTTAAGTGCGACATGTGCAGTGCAACATTTGCCCACTCCAGCTCCTTGGTGGCCCATAAGAGAATCCATTCAGGGGAGCGACCCTATGTATGTGACATTTGCCATCAGTCTTTCCGGGAATCCGGGCAGATGTCGACTCATCGAAGGACACATTTCGATAAAACCCTCAAATGCCCTCAGTGCAATCAGTTCTATGCATCTTCCAAAAATCTAAGAGCCCACCTCCGCACCCATACCGGGGAAAAGCCCTACAACTGCATGCATTGTGGAAAGAGTTTTCGGACGTCCACAGCACTAACTCTACACATCCGAGTACATACTGGCGAAAAACCGTTCAAATGCCCTCAGTGCCCCTATGCCACGAAACAGTCTGGATCGCTTAAGTCTCACATCAGGACCCACACAGGTGAGCGCCCTTTTAAGTGCGATCTTTGCGAACGTTCCTACACTGAGAAGAAGCGCCTTATCACCCACTACAGAACACACACGGGCGAGCGACCCTACAAGTGTGACTATTGCGACTCTGCATTCATTCGGAGCGATAATCTGCGCAGCCACCTCAGAACTCACACTGGAGAAAAACCGTTCAAGTGCCCCGACTGCCCAAAGGCTTTCGCCCAAAAGACAACCTTGAAGGCCCACGAAAAGGTCCATTCTGGAGAAAAGCCTTACGCTTGCCCCTTCTGCGATCAGGTATTTCGCCAGTCGGGCACCCTGCAGACGCATATGCGAATTCACGATAATGAGAAGCCATTCCATTGCCAGCTTTGCGACAGAAGTTTCCGGCAGACAAGCAACCTCCGACGGCATATAACAATTGACCACAACATGGTGATGGAGGAGCAGCCCTTCTATAGTCACTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSVGDDSQYSDFLLTDDMIKKEPEFIINEDEAEGEKIRSFLKKTAIDDNDRKNLKWHNCIICEERFLNIEDLSLHVQGHIKKEKVDDVEKALNHRQAPKTQHTGFSREECFRDYVKINVNLDGDPTYLCKLCNGKPFTKLIAIQNHMRIHQSPIYKDRTCHVCKRTFLRRDTLMVHLRTHSQERPFKCDMCSATFAHSSSLVAHKRIHSGERPYVCDICHQSFRESGQMSTHRRTHFDKTLKCPQCNQFYASSKNLRAHLRTHTGEKPYNCMHCGKSFRTSTALTLHIRVHTGEKPFKCPQCPYATKQSGSLKSHIRTHTGERPFKCDLCERSYTEKKRLITHYRTHTGERPYKCDYCDSAFIRSDNLRSHLRTHTGEKPFKCPDCPKAFAQKTTLKAHEKVHSGEKPYACPFCDQVFRQSGTLQTHMRIHDNEKPFHCQLCDRSFRQTSNLRRHITIDHNMVMEEQPFYSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_01184194;
- 80% Identity
- iTF_00628549;