Tcin030865.1
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- -
- Assembly
- GCA_959613345.1
- Location
- OY390709.1:40399179-40400666[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.041 2.8e+02 3.1 0.3 17 43 202 227 198 232 0.82 2 10 0.0065 45 5.7 0.3 21 49 233 260 226 264 0.81 3 10 0.00081 5.5 8.6 0.3 22 47 261 286 254 293 0.80 4 10 0.15 1e+03 1.3 0.1 21 47 288 314 284 319 0.84 5 10 0.0031 21 6.7 0.1 21 45 316 340 312 347 0.88 6 10 0.84 5.8e+03 -1.1 0.1 21 31 344 354 340 370 0.76 7 10 0.001 7.1 8.2 0.2 21 47 372 398 356 404 0.82 8 10 0.091 6.2e+02 2.0 0.0 21 46 400 425 396 431 0.82 9 10 5.3e-05 0.37 12.3 0.2 21 52 428 459 410 461 0.85 10 10 2.5e-05 0.17 13.4 0.7 23 48 458 483 453 485 0.91
Sequence Information
- Coding Sequence
- atGGCTGGGAAAATGCTCGAGATGAAGAGCATCCTTCTCGCAGACTTTACTGCGGACAGCTGCAGCAGTTTTTCAGTTGGGGACGACAGTCAATACTCGGATTTTCTGCTCACAGATGATATGATCAAGAAGGAGCCCGAGTTCATTATCGACGAGGACGAGACTGAGGGTGAAAAGATTCGGAACTTCCTGAAGAAAACTGCCATTGACGAGAACGACAGAAAGAATTTACAGTGGCATAATTGTATCATATGCGAGGAGCGTTTCCTTAACATAGAGGATTTGTCATTTCATGTCCAAGGACACATAAAGAAAGAGAAGGTGGACGACGTCGAAAAAACGCTCAACCACCGGCAAGCCCCGAAGACTCAGCACACTGGACTCTCACGAGAGGAGTGCTTCAGGGactatgttaaaattaatgtcaGTTTGAAAGGGGATCCGACGTACTTATGTAAGTTGTGCAATGGTAAGCCCTTCACAAAGCTCATAGCCATCCAGAACCACATGCGCATCCACCAGAGCCCCATCTACAAGGACCGAACTTGCCACGTTTGTAAGAGGACCTTCCTAAGAAGGGACACGCTGATGGTCCACCTGAGGACGCACAGTCAGGAGCGGCCGTACAAGTGCAATATGTGCAGTGCAACATTCGCCCACTCGAGCTCCTTGGTCGCCCACAAACGGATCCATTCTGGAGAAAGGCCCTACATATGCGATATCTGCCACCAGTCCTTCAGGGAGTCCGGCCAAATGTCGACGCATCGAAGGACGCATTTTGATAAAACTCTCAAATGCCCCCAGTGCGATCAGTTGTATGCATCTTCAAAAAATCTCAGAGCGCATCTTCGAACGCATACCGGGGAAAAGCCCTACAACTGCATGCACTGCGGAAAGTGTTTTCGAACGTCGACAGCACTCACTCTGCACATTCGAGTTCACACGGGGGAAAAGCCATTCAAATGCCCTCAGTGTCCTTACGCGACCAAACAGTCCGGGTCCCTGAAGTCCCATATCAGGACCCACACGGGAGAGCGTCCTTTCAAGTGCGACATTTGCGAGCGGTCATACACTGAAAAGAAGCGCCTTATTACCCATTACAGGACACACACGGGCGAACGGCCCTACAAATGTGAGTACTGCGAGTCGGCGTTCATCCGGAGCGACAATCTGCGCAGCCACCTTAGAACCCACACCGGAGAGAAACCGTTTAAATGTCCGGACTGCCCAAAGGCGTTCGCCCAGAAGACAACGTTGAAGGCCCACGAAAAGGTTCATTCCGGGGAAAAACCGTACCCTTGCCCGTACTGCGAGCAGTCGTTTCGCCAGTCGGGAACCCTCCAGACGCACATGCGAATCCACGACAATATGAAGCCATTCCATTGTCAACTGTGCGACAGGAGCTTCCGGCAGACTAGCAATCTCAGGCGCCACATAGCAATCGACCACAACATGGTGATTGATCAGCAGCCTTTCTATAGTCACTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSSFSVGDDSQYSDFLLTDDMIKKEPEFIIDEDETEGEKIRNFLKKTAIDENDRKNLQWHNCIICEERFLNIEDLSFHVQGHIKKEKVDDVEKTLNHRQAPKTQHTGLSREECFRDYVKINVSLKGDPTYLCKLCNGKPFTKLIAIQNHMRIHQSPIYKDRTCHVCKRTFLRRDTLMVHLRTHSQERPYKCNMCSATFAHSSSLVAHKRIHSGERPYICDICHQSFRESGQMSTHRRTHFDKTLKCPQCDQLYASSKNLRAHLRTHTGEKPYNCMHCGKCFRTSTALTLHIRVHTGEKPFKCPQCPYATKQSGSLKSHIRTHTGERPFKCDICERSYTEKKRLITHYRTHTGERPYKCEYCESAFIRSDNLRSHLRTHTGEKPFKCPDCPKAFAQKTTLKAHEKVHSGEKPYPCPYCEQSFRQSGTLQTHMRIHDNMKPFHCQLCDRSFRQTSNLRRHIAIDHNMVIDQQPFYSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425042;
- 90% Identity
- iTF_01184194;
- 80% Identity
- iTF_01461331;