Basic Information

Insect: Pentalonia nigronervosa
Gene Symbol: -
Assembly: GCA_014851325.1
Location: scaffold:2472-11939[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.1e-06 0.00058 20.7 3.6 1 23 228 250 228 250 0.98

2 14 0.00035 0.04 14.9 3.5 1 23 256 278 256 278 0.97

3 14 0.0013 0.15 13.1 1.8 1 23 368 390 368 391 0.94

4 14 3.8e-05 0.0044 18.0 1.4 1 23 425 447 425 447 0.98

5 14 1.3 1.5e+02 3.7 2.3 2 23 465 486 464 486 0.90

6 14 0.036 4.2 8.6 0.1 2 23 497 519 496 519 0.91

7 14 0.00061 0.07 14.2 1.4 1 23 526 548 526 548 0.98

8 14 0.0041 0.48 11.6 3.0 5 23 557 575 554 575 0.93

9 14 0.0047 0.54 11.4 0.0 2 23 581 602 580 602 0.96

10 14 6.1e-06 0.00071 20.5 0.2 1 23 618 640 618 640 0.98

11 14 0.00016 0.019 16.0 0.2 3 23 648 668 646 668 0.97

12 14 1.6e-05 0.0019 19.1 0.1 1 23 674 696 674 697 0.95

13 14 0.00078 0.09 13.8 1.7 1 23 710 732 710 732 0.95

14 14 1.2e-05 0.0014 19.6 0.1 2 23 1019 1041 1018 1041 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.1e-06	0.00058	20.7	3.6	1	23	228	250	228	250	0.98
2	14	0.00035	0.04	14.9	3.5	1	23	256	278	256	278	0.97
3	14	0.0013	0.15	13.1	1.8	1	23	368	390	368	391	0.94
4	14	3.8e-05	0.0044	18.0	1.4	1	23	425	447	425	447	0.98
5	14	1.3	1.5e+02	3.7	2.3	2	23	465	486	464	486	0.90
6	14	0.036	4.2	8.6	0.1	2	23	497	519	496	519	0.91
7	14	0.00061	0.07	14.2	1.4	1	23	526	548	526	548	0.98
8	14	0.0041	0.48	11.6	3.0	5	23	557	575	554	575	0.93
9	14	0.0047	0.54	11.4	0.0	2	23	581	602	580	602	0.96
10	14	6.1e-06	0.00071	20.5	0.2	1	23	618	640	618	640	0.98
11	14	0.00016	0.019	16.0	0.2	3	23	648	668	646	668	0.97
12	14	1.6e-05	0.0019	19.1	0.1	1	23	674	696	674	697	0.95
13	14	0.00078	0.09	13.8	1.7	1	23	710	732	710	732	0.95
14	14	1.2e-05	0.0014	19.6	0.1	2	23	1019	1041	1018	1041	0.96

Sequence Information

Coding Sequence: ATGTCCGACGAACAGTTGCGTGGCGGGATATTCCCTAAACCACCACCCTGTTTAACCATGGACACTGACTTTGTGGAAGAAATTGTGTCCATCCATTCTGGTAGTCAAACACTAGATTTTGATAGTAAGGACAGTATTTTATGTCCGGGCAATGTTGTCAACTCTATTGCCAAGACCGAATTTTTCAGTCCGGACGACATTGACACTATGTCACCCGACAATTGTTTAATACAAACCATTGAGCCCTCGTATTTCACCAACATTGGTACACGCGAAAATGAGCTCAATAATATGACTAGAGCGGTCATGGAATCTGTGCCATATGCCGATGGGTTACAATACTTAGCTGCCATATCTTCATTCAGTGATAATTTTAAGGAAATGGATAAAGGGCAGCAAATTAAACAAGAGCCTATTGACCCTAGTGACTTATTTGAGTCTAGTGATGAAGAAGTTGTCCAACAAATGACTCAAGAAGAATATCAAAATTTTTTTGATGTCCAAGAGGAAGTTGTTGTTCAAGAATGTCCTGAGCAAGAGATAATCACTCAAAGTTGGAACACGAACCACTCTTCTGATATTGACACCATATTAGAAACAGAAGTTGAATGTATGTCATCAACTGATGATGTTGACATACCAATACCTGAAGGCGAAGAAGCTTCATCTTCTGTTAATCCATATCCATGTGATTTTTGTAGTCGTAGATTTAATCGAAAATCACATCTTATGAATCATATGGTTACTCATCAATCCGAGCGTCCCTATTGTTGTGCACTATGTGGTGTTCGTTATCGACGTAAATGTGATTTAGCCAATCATATGAAAATTCATATCGGTCCTGATAATCCATCAGATAGTGGTTTAGATAGCCAAAATATATCTGTTACAAAAGTAATGAACAAATTAATGTTCATGGATCCAATACATAGAAGGAGTGTTACACCTGGTGAAGATTCTGAAGATAAAGGAGACATATTTCAGGAACCAAATAATACAAAAAACCGTGGCCGCGGTAAAGGTCGGGGTAGAGGAAAAGGTCGTCCAATAAAAGATCGCTTAATTTCTCTTGGTTGGAATTCAGAAGTATACTCAAAACCACATACTTGTAATCCATGTGGAATTTCATTTACACGTGAAAAAGCACTTCTTAATCATGCTCGTCTTCATCATATTGATGATGGTGTAAATATTGTAACTACTCAAAAATCTAATTCAGACTCTTATGAGCTTACAATATTGGCTAATACTAAATCCAGTGATGTCACTTCTTATTCTTGTGATTCATGTGGAGCAGTATTTAACAGATTTGATTTTTTAAAGCGTCATCAAAGGCAGCATATGAAAAAAGAACTTGGAAATGTTGAAGAAGAAATTTACGAAGAAGCACATATGTGTATACATTGTGGATTATTCTTTAAGTCTATGCTAGAATTAGAATTGCACACTGAACAACACTTGATTCCTACAAATATTTCAGAAAAATCAAAATGTTTGGCTTGTGGTGAAACATTTGATAGTACAGATGAGTTATCCGATCATGTGTCTCAAATTCATACTGATTCATTATCTGTATATTCGTGTAAACTTTGTGGAAAACTATGTAAAGATGATAAAGCTCTCCAAAAACATTTAATAATCCATGACACATCTGATAATAATTGTATAATGTGTGGTAAAAGATTTCATTCCAGAGCACGTCTTAAACGACACATGGTAACTCATCGAGAAAAAGGAGTTACTTGTGACATATGCGGTGAAGAAGTAGCTGATAAACGAGCACTAATTAATCACAAAGCCAGTCATGCAAATACTGTTAGTATTTCACGAAATTCATTGACTGAAAAAATATTTCCCTGTACTAATTGTGGCAAAGTATTTGGATCTAGATCATCTCAACAAATACATATACGAATACATACAGGAGAACGACCTTATGGCTGTAGATATTGTGACAAAGCTTTTGCTGATGGTGGAACACTTCGAAAACATGAACGAATACATACTGGTGAAAAGCCATATGCTTGTCCTGTCTGTCCAAAGGCGTTCAATCAAAGAGTTGTATTGCGTGAACACATACGTGCACATCATGCTGGAAATGAGGCAAAGGGCGGTCAAGTAAATTTTTTTGAATGTAAAGTGTGTGGTTATTTGTTTCGATCTTCAATGGAGCTTTGTTCACATTTAGTTCAGCATAGTGACGAAAATACTAAAAAATCTAGAGTAGTTCCTGTCGGACCTCGTAAATATAAGCGTCGCAGCAAGTTGGGTAATCGAAAAGATACATGGTGTTTAGTAGAAAAAGTCTTTACAGTTATGTCAGGGCAGTCAGACACAGAGAGCTGTGAAGATGAACCGATGCCTACAGTAGAAGAGCAAGCTGTACAATCAATTATGGAACAGGATGATGTGCCTAATGATTCTTCATCTTTACCTAGTCTTCCTACAGCTATACCTATTCCTTCTAAAAGGGTTCCAGCTACATACAAAATTGTTAATGGCAGGTTAGTGAAAGTTAGTGAATCAAAGGCTCCAAAACAAATGCCATGTGAATCAAAATATCCAGTTCCCAAATCGGAACCTATACCAAAAAAGAATAGGTTTGTGCTTAAAGATGGAGAGTGCACTAGAACCTGTTCAACTGTTTGTTATTATTCTTCAAGATCTGATCCAACAGTTATAGATCCATCTTTAGGAGAGGAATCGAAAGAAAATAATAATCCAGAAGAACTTGAAGATCAGATATCTGTAGAGGATACGGATTATTCAAACCAGAGAGTAACGCAATATAATATTCAATCATTATTGTCTCATGTAGACGATTTCAGTAACATAACCGTTGGTGATTTACCCCGTGAAGATGGAGTAGAATACTTTGTTGAAAATAATGATGGCCATTACGGTGATCATGTCGATTTAATTTTGCAAACTTCATCAAATGATGGTTACTTGATTGAAACAGAATTAGTATTTGATACAGATTATGTTGAGGAGGTTGGTGCTAACATTGAGCTGAGCACTGAAGAAATGGTACCTGTATTTGCAGAAAATATTTCTTGTGATATTTGCGATGAAATATTTGAGGATAGAAAAGAGCTAATGAGACACATTCAAACCATGCACATTGGATAA
Protein Sequence: MSDEQLRGGIFPKPPPCLTMDTDFVEEIVSIHSGSQTLDFDSKDSILCPGNVVNSIAKTEFFSPDDIDTMSPDNCLIQTIEPSYFTNIGTRENELNNMTRAVMESVPYADGLQYLAAISSFSDNFKEMDKGQQIKQEPIDPSDLFESSDEEVVQQMTQEEYQNFFDVQEEVVVQECPEQEIITQSWNTNHSSDIDTILETEVECMSSTDDVDIPIPEGEEASSSVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPYCCALCGVRYRRKCDLANHMKIHIGPDNPSDSGLDSQNISVTKVMNKLMFMDPIHRRSVTPGEDSEDKGDIFQEPNNTKNRGRGKGRGRGKGRPIKDRLISLGWNSEVYSKPHTCNPCGISFTREKALLNHARLHHIDDGVNIVTTQKSNSDSYELTILANTKSSDVTSYSCDSCGAVFNRFDFLKRHQRQHMKKELGNVEEEIYEEAHMCIHCGLFFKSMLELELHTEQHLIPTNISEKSKCLACGETFDSTDELSDHVSQIHTDSLSVYSCKLCGKLCKDDKALQKHLIIHDTSDNNCIMCGKRFHSRARLKRHMVTHREKGVTCDICGEEVADKRALINHKASHANTVSISRNSLTEKIFPCTNCGKVFGSRSSQQIHIRIHTGERPYGCRYCDKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGNEAKGGQVNFFECKVCGYLFRSSMELCSHLVQHSDENTKKSRVVPVGPRKYKRRSKLGNRKDTWCLVEKVFTVMSGQSDTESCEDEPMPTVEEQAVQSIMEQDDVPNDSSSLPSLPTAIPIPSKRVPATYKIVNGRLVKVSESKAPKQMPCESKYPVPKSEPIPKKNRFVLKDGECTRTCSTVCYYSSRSDPTVIDPSLGEESKENNNPEELEDQISVEDTDYSNQRVTQYNIQSLLSHVDDFSNITVGDLPREDGVEYFVENNDGHYGDHVDLILQTSSNDGYLIETELVFDTDYVEEVGANIELSTEEMVPVFAENISCDICDEIFEDRKELMRHIQTMHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942078; iTF_01304359; iTF_01329189; iTF_01305030; iTF_01305855; iTF_01032353; iTF_00019588; iTF_01033209; iTF_00136318; iTF_00973222; iTF_00135598; iTF_00134747; iTF_00463519;
90% Identity: -
80% Identity: -