Rpad026153.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000007807.1679145:1251468-1265429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.9e-06 0.00049 20.9 3.6 1 23 101 123 101 123 0.98 2 14 0.00039 0.049 14.6 3.7 1 23 129 151 129 151 0.97 3 14 0.001 0.13 13.3 1.8 1 23 240 262 240 263 0.94 4 14 4.4e-05 0.0055 17.6 1.1 1 23 297 319 297 319 0.98 5 14 1.5 1.8e+02 3.4 1.9 2 23 337 358 336 358 0.90 6 14 0.0025 0.32 12.1 0.1 2 23 369 391 368 391 0.93 7 14 7.8e-05 0.0098 16.8 2.1 1 23 398 420 398 420 0.98 8 14 0.0032 0.4 11.8 3.0 5 23 429 447 426 447 0.93 9 14 0.0064 0.81 10.8 0.0 3 23 454 474 452 474 0.95 10 14 1.7e-05 0.0021 18.9 0.2 1 23 490 512 490 512 0.98 11 14 0.00019 0.023 15.6 0.2 3 23 520 540 518 540 0.97 12 14 1.3e-05 0.0016 19.3 0.1 1 23 546 568 546 569 0.95 13 14 0.00042 0.052 14.5 1.6 1 23 582 604 582 604 0.96 14 14 3.2e-06 0.0004 21.2 0.1 2 23 884 906 883 906 0.96
Sequence Information
- Coding Sequence
- ATGGACCCCGGGCAGCGAGTCAAACAAGAGCCTGTTGACCCTAGCGATTTATTTGAGTCTAGTGATGAGGAAGTTGTCCAGCAAATGACCCAAGAGGAATACCAGGAATTTTTTGATGTACAAGAAGAAGTTGTTGTTCAAGAATGCCCCGAGCAAGAAATAATCACTCAAAGTTGGGACATGAATCGCTCTACTAATATTGACACCATATTAGAAACAGAAGTTGAATGTATGTCATCAACTGATGATGTTGATATACCAATACCTGAAGGCGAAGAAGCTTCATCTTCTGTTAATCCATATCCATGTGATTTTTGTAGTCGGAGATTTAATCGAAAATCACATCTTATGAATCATATGGTTACTCATCAATCTGAGCGTCCCTTTTGTTGTGCATTATGCGGTGTTCGTTATCGACGTAAATGTGATTTAGCTAATCATATGAAAATTCATATTGGTCCTGATAATCAATCAGATGGTGGTTTAGATAACCAAAATGTATCTGTTACAAAAGTAATGAACAAATTAATGTTCGTGGATCCAATACATAGAAGGAGTGTTACACCTGGTGATGATTCTGAAGATAAAGGAGACACATATCAAGAACCAAATACAAAAATTTGTGGCCGCGGTAAAGGCCGGGGTAGAGGAAAAGGCCGTCCAATGAAAGATCGGTTAATTACTCTTGGTTGGAATTCAGAACTTTACTCAAAACCACATACATGTAACCCATGTGGAATTTCATTTACACGTGAAAAAGCACTTCTTAATCATGCTCGTCTTCATCATATTGATGATGGTGTAAATATTGTAACTACTCAAAAATCAAATTCAGATAGTTATGAGCTTACAATATTAGCTAATTCTAAATCCAGTGATGTGACTTCTTATTCTTGTGATTCATGTGGAGCAGTATTTGACAGATTTGATTTTTTAAAACGTCATCAAAGGCAGCATATGAAAAAAGAACTTGGAAATGCCGAAGAAGAAATATATGAAGAAGCGCATATGTGTATACATTGTGGATTGTTCTTTAAGTCTATGCCAGAGTTAGATATGCATACTGAGCAACATTTGATTCCTACAAACATTTCTGAAAAATCAAAATGTTTAGTTTGTGGTGAAACATTTGATAGTACAGATGAGCTGTCTGATCATGTGTCTCAAATTCATACTGATTCATTATCTGAATATTCATGTAAACTTTGTGGAAAACAATGCAAAGACGATAAAGCTCTCCAAAAACATTTAATGATTCATGACACATCTGATAATAATTGTATAATGTGTGGTAAAAGATTTCATTCCAGAGCACGTCTTAAACGTCATATGGTAACTCATCGAGAAAAAGGAGTAATTTGTGACATTTGCGGTGAAGAAGTAGCTGATAAACGAGCACTTATTAATCATAAAGCCAGTCATGCAAATACTGTTAGTATTTCACGAAATTCAATGACTGAAAAAATATTTCCTTGTACTAGTTGTGGAAAAGTATTTGGATCTAGATCATCTCAACAAATACACATACGAATACATACAGGAGAACGACCTTATGGTTGTAGATATTGTAATAAAGCTTTTGCTGATGGTGGTACTCTTCGAAAACATGAACGAATACATACTGGTGAAAAGCCATATGCTTGTCCTGTCTGCCCAAAGGCATTCAATCAAAGAGTTGTATTGCGTGAACATATACGAGCACATCATGCTGGAACTGAGGCAAAAGGTGGTCAAGTAAATTTTTATGAATGTAAAGTGTGTGGATATTTGTTCCGATCTTCAATGGAGCTTTGTTCACATTTAGTTCAGCACAGTGATGACAATACTAAACGATCTAGAGTAGTACCTATTGGACCTCGCAAGTATAAGCGTCGTAGCAAGTTGGGTAATCGAAAAGATACGTGGTGCTTAGTAGAAAAAGTATTTACAGTTATGTCTGGGCAGTCCGACACAGAGAGCTGCGAAGATGAACCCATGCCTACAGTAGAAGAGCAAGCAGTACAATCAATAATAGAACAGGATGATATGCCTTACAATCCTCCAACTATAGCTCCTCCTAGTCCTCCTAGTAAGTCTCCAGTTAAAACATACAAAATTGTTAATGGCAGGTTAGTAAAAAGCGAACAAAAGTCTTCTAAACAAAGTTCAAGTGAATCAAAACACACAGTTCCCAAGCCAGAATCTATACCAAAAAAGCATAGCTTTGTGCTTAAAGATGGAGAATGCACTAGAACATGTTCAACTGTTCTTTATTATTCTTCAAGATCTGATCCTACAGTTATGGATTCGTCATTAGGAGAGGAATCCAAAGAAAATGATAATCCAGAAGAACCTGAAGATCAGATATCTGTAGAGGATACAGATTTTAGTAACATGAAAATCGAGGCAGTTAGTGCCCAGTCAATATTTAATGTACAAGATTTAGACAACATATGCAACATTGATTTTTCTGGTGAAAATGGAGTACAATATTTTGTAGATAATTCTGATGGTCGATATGGCGATCATTGTGATTTAATTGTGGAAGCTTCAAATGATGATTGTTTGATTGAAACAGAACTAGTGTTTGATACAGATTATGTTGAGGAGGTTGGTGCTAACATTGAGCTGAGCACTGAAGAAATGGCACCTGTTTTTGCAGAAATTATTTCTTGTGATATTTGCGATGAAGTATTTGAGGATAGAAAGGAACTTATGAGACACATTCAAACCATGCACATTGGATAA
- Protein Sequence
- MDPGQRVKQEPVDPSDLFESSDEEVVQQMTQEEYQEFFDVQEEVVVQECPEQEIITQSWDMNRSTNIDTILETEVECMSSTDDVDIPIPEGEEASSSVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPFCCALCGVRYRRKCDLANHMKIHIGPDNQSDGGLDNQNVSVTKVMNKLMFVDPIHRRSVTPGDDSEDKGDTYQEPNTKICGRGKGRGRGKGRPMKDRLITLGWNSELYSKPHTCNPCGISFTREKALLNHARLHHIDDGVNIVTTQKSNSDSYELTILANSKSSDVTSYSCDSCGAVFDRFDFLKRHQRQHMKKELGNAEEEIYEEAHMCIHCGLFFKSMPELDMHTEQHLIPTNISEKSKCLVCGETFDSTDELSDHVSQIHTDSLSEYSCKLCGKQCKDDKALQKHLMIHDTSDNNCIMCGKRFHSRARLKRHMVTHREKGVICDICGEEVADKRALINHKASHANTVSISRNSMTEKIFPCTSCGKVFGSRSSQQIHIRIHTGERPYGCRYCNKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGTEAKGGQVNFYECKVCGYLFRSSMELCSHLVQHSDDNTKRSRVVPIGPRKYKRRSKLGNRKDTWCLVEKVFTVMSGQSDTESCEDEPMPTVEEQAVQSIIEQDDMPYNPPTIAPPSPPSKSPVKTYKIVNGRLVKSEQKSSKQSSSESKHTVPKPESIPKKHSFVLKDGECTRTCSTVLYYSSRSDPTVMDSSLGEESKENDNPEEPEDQISVEDTDFSNMKIEAVSAQSIFNVQDLDNICNIDFSGENGVQYFVDNSDGRYGDHCDLIVEASNDDCLIETELVFDTDYVEEVGANIELSTEEMAPVFAEIISCDICDEVFEDRKELMRHIQTMHIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167906;
- 90% Identity
- iTF_00135598;
- 80% Identity
- -