Basic Information

Insect: Rhopalosiphum maidis
Gene Symbol: -
Assembly: GCA_003676215.3
Location: NC:64985518-64996147[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5e-06 0.00025 20.7 3.6 1 23 224 246 224 246 0.98

2 14 0.00036 0.025 14.4 3.7 1 23 252 274 252 274 0.97

3 14 0.00092 0.066 13.1 1.8 1 23 363 385 363 386 0.94

4 14 4e-05 0.0029 17.4 1.1 1 23 420 442 420 442 0.98

5 14 1.3 94 3.2 1.9 2 23 460 481 459 481 0.90

6 14 0.0023 0.16 11.9 0.1 2 23 492 514 491 514 0.93

7 14 0.00027 0.019 14.8 1.8 1 23 521 543 521 543 0.98

8 14 0.0029 0.2 11.6 3.0 5 23 552 570 549 570 0.93

9 14 0.0058 0.41 10.6 0.0 3 23 577 597 575 597 0.95

10 14 1.5e-05 0.0011 18.7 0.2 1 23 613 635 613 635 0.98

11 14 0.00017 0.012 15.4 0.2 3 23 643 663 641 663 0.97

12 14 1.1e-05 0.00081 19.1 0.1 1 23 669 691 669 692 0.95

13 14 0.00038 0.027 14.3 1.6 1 23 705 727 705 727 0.96

14 14 2.9e-06 0.0002 21.0 0.1 2 23 1007 1029 1006 1029 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5e-06	0.00025	20.7	3.6	1	23	224	246	224	246	0.98
2	14	0.00036	0.025	14.4	3.7	1	23	252	274	252	274	0.97
3	14	0.00092	0.066	13.1	1.8	1	23	363	385	363	386	0.94
4	14	4e-05	0.0029	17.4	1.1	1	23	420	442	420	442	0.98
5	14	1.3	94	3.2	1.9	2	23	460	481	459	481	0.90
6	14	0.0023	0.16	11.9	0.1	2	23	492	514	491	514	0.93
7	14	0.00027	0.019	14.8	1.8	1	23	521	543	521	543	0.98
8	14	0.0029	0.2	11.6	3.0	5	23	552	570	549	570	0.93
9	14	0.0058	0.41	10.6	0.0	3	23	577	597	575	597	0.95
10	14	1.5e-05	0.0011	18.7	0.2	1	23	613	635	613	635	0.98
11	14	0.00017	0.012	15.4	0.2	3	23	643	663	641	663	0.97
12	14	1.1e-05	0.00081	19.1	0.1	1	23	669	691	669	692	0.95
13	14	0.00038	0.027	14.3	1.6	1	23	705	727	705	727	0.96
14	14	2.9e-06	0.0002	21.0	0.1	2	23	1007	1029	1006	1029	0.96

Sequence Information

Coding Sequence: ATGGACACTGACTTTGTGGAAGAAATCGTGTCCATCAATTCTGGTAGCCAAACACTAGATTTTGATAGAAAGGACTCTATTTTATGTTCGGACAGTGTTAACTCTATTGTCAAGACAGAGTTCTTCAGTCCGGACAATGTTAATAACTCTATTGTCAAGACGGAGTACTTCAGTCCGGACGACATTGATGATGCTATGTCGTCTGACAATTGTTTAATACAAACCATTGAGCCCTCGTATTTCACCAACAGTGGTACACGCGAAAATGAGCTCAATAATATGACTAGAGCGGTCATGGAATCTGTGCCATATGCCGATGGGTTACAATACTTAGCTGCCATATCTTCATTCAGTGATAATTTTAAGGAAATGGACCCCGGGCAGCGAGTCAAACAAGAGCCTGTTGACCCTAGTGATTTATTTGAGTCTAGTGATGAGGAAGTTGTTCAGCAAATGACCCAAGAGGAATACCAGGAATTTTTTGATGTACAAGAAGAAGTTGTCGTTCAAGAATGCCCTGAGCAAGAAATAATCACTCAAAGTTGGGACATCAATCGCTCTACTAATATTGACACcaTATTAGAAACAGAAGTTGAATGTATGTCATCAACTGATGATGTTGATATACCCATACCTGAAGGCGAAGAAGCTTCATCTTCTGTTAATCCATATCCATGTGATTTTTGTAGTCGGAGATTTAATCGAAAATCACATCTTATGAATCATATGGTTACTCATCAATCTGAGCGTCCCTTTTGTTGTGCATTATGCGGTGTTCGTTATCGACGTAAATGTGATTTAGCTAATCATATGAAAATTCATATTGGTCCTGATAATCAATCAGATAATggtttagataACCAAAATGTATCTGTTACAAAAGTAATGAACAAATTAATGTTCGTGGATCCAATACATAGAAGGAGTGTTACACCTGGTGATGATTCTGAAGATAAAGGAGACACATATCAAGAaccaaatacaaaaattcGTGGCCGTGGTAAAGGCCGGGGTAGAGGAAAAGGCCGTCCAATGAAAGATCGGTTAATTACTCTTGGTTGGAATTCAGAACTTTACTCAAAACCACATACATGTAATCCATGTGGAATTTCATTTACACGTGAAAAAGCACTTCTTAATCATGCTCGTCTTCATCATATTGATGATGgtgtaaatattgtaactactcaaaaatcaaattcagaTAGTTACGAGCTTACAATATTAGCTAATTCTAAATCCAGTGATGTGACTTCTTATTCTTGTGATTCATGTGGAGCAGTATTTGacagatttgattttttaaaacgtcatcaaaggcAGCATATGAAAAAAGAACTTGGAAATGCCGAAGAAGAAATATACGAAGAAGCGCATATGTGTATACATTGTGGATTGTTCTTTAAGTCTATGCCAGAGTTAGATATGCATACTGAGCAACATTTGATTCCTACAAACATTTCtgaaaaatcaaaatgtttagtttgTGGTGAAACATTTGATAGTACAGATGAGCTGTCTGATCATGTATCTCAAATTCATACTGATTCATTAACTGAATATTCGTGTAAACTTTGTGGAAAACTATGCAAAGACGATAAAGCTCtccaaaaacatttaatgattCATGACACatctgataataattgtataatgtgtGGTAAAAGATTTCATTCCAGAGCACGTCTTAAACGtcataTGGTAACTCATCGAGAAAAAGGAGTAATTTGTGACATTTGCGGTGAAGAAGTAGCTGATAAACGAGCACTCATTAATCATAAAGCCAGTCATGCAAATACTGTTAGTATTTCACGAAATTCAAtgactgaaaaaatatttccttgTACTAGTTGTGGAAAAgtatttggATCTAGATCATCTCAACAAATACACATACGAATACATACAGGAGAACGGCCTTATGGTTGTAGATATTGTAATAAAGCTTTTGCTGATGGTGGTACTCTTCGAAAACATGAACGAATACATACTGGTGAAAAGCCATATGCTTGTCCTGTCTGCCCAAAGGCATTCAATCAAAgagttgTATTGCGTGAACATATACGAGCACATCATGCTGGAACTGAGGCAAAAGGTGGTcaagtaaatttttatgaatgtaaAGTGTGTGGATATTTGTTCCGATCTTCAATGGAGCTTTGTTCACATTTAGTTCAGCACAGTGATGATAATACTAAACGATCTAGAGTAGTACctATTGGACCTCGCAAGTATAAGCGTCGTAGCAAGTTGGGTAATCGAAAAGATACGTGGTGCTTAGTAGAAAAAGTATTTACAGTTATGTCTGGGCAGTCCGACACAGAGAGCTGTGAAGATGAACCCATGCCTACAGTAGAAGAGCAAGCAGTACAATCAATAATAGAACAGGATGATATGCCTTACAATCCTCCTACTATAACTCCTCCTAGTCCTCCTAGTAAGTCTCCAgttaaaacatacaaaattgTTAATGGCAGGTTAGTAAAAAGTGAACAGAAGTCTTCTAAACAAGGTTCAAGTGAATCAAAACACACAATTCCCAAGCCAGAATCTATACCAAAAAAGCATAGCTTTGTGCTTAAAGATGGAGAGTGCACTAGAACATGTTCAACTGTTCTTTATTATTCTTCAAGATCTGATCCTACAGTTATGGATTCATCATTAGGAGAGGAATCCAAAGAAAATGATAATCCAGAAGAACCTGAAGATCAGATATCTGTAGAGGATACAGATTTTAGTAACATGAAGATCGAGGCAGTTAGTGCCCagtcaatatttaatgtacaagATTTAGACAACATATGCAACATTGATTTTTCTGGTGAAAACGgagtacaatattttgtagataATTCTGATGGTCGATATGGTGATCATTGTGATTTAATTGTGGAAGCTTCAAATGATGATTGTTTGATTGAAACAGAACTAGTGTTTGATACAGATTATGTTGAGGAGGTTGGTGCTAACATTGAGCTGAGCACTGAAGAAATGGCGCCTGTTTTTGCAGAAATTATTTCTTGTGATATTTGTGATGAAGTATTTGAGGATAGAAAGGAACTTATGAGACACATTCAAACCATGCACATTGGATAA
Protein Sequence: MDTDFVEEIVSINSGSQTLDFDRKDSILCSDSVNSIVKTEFFSPDNVNNSIVKTEYFSPDDIDDAMSSDNCLIQTIEPSYFTNSGTRENELNNMTRAVMESVPYADGLQYLAAISSFSDNFKEMDPGQRVKQEPVDPSDLFESSDEEVVQQMTQEEYQEFFDVQEEVVVQECPEQEIITQSWDINRSTNIDTILETEVECMSSTDDVDIPIPEGEEASSSVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPFCCALCGVRYRRKCDLANHMKIHIGPDNQSDNGLDNQNVSVTKVMNKLMFVDPIHRRSVTPGDDSEDKGDTYQEPNTKIRGRGKGRGRGKGRPMKDRLITLGWNSELYSKPHTCNPCGISFTREKALLNHARLHHIDDGVNIVTTQKSNSDSYELTILANSKSSDVTSYSCDSCGAVFDRFDFLKRHQRQHMKKELGNAEEEIYEEAHMCIHCGLFFKSMPELDMHTEQHLIPTNISEKSKCLVCGETFDSTDELSDHVSQIHTDSLTEYSCKLCGKLCKDDKALQKHLMIHDTSDNNCIMCGKRFHSRARLKRHMVTHREKGVICDICGEEVADKRALINHKASHANTVSISRNSMTEKIFPCTSCGKVFGSRSSQQIHIRIHTGERPYGCRYCNKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGTEAKGGQVNFYECKVCGYLFRSSMELCSHLVQHSDDNTKRSRVVPIGPRKYKRRSKLGNRKDTWCLVEKVFTVMSGQSDTESCEDEPMPTVEEQAVQSIIEQDDMPYNPPTITPPSPPSKSPVKTYKIVNGRLVKSEQKSSKQGSSESKHTIPKPESIPKKHSFVLKDGECTRTCSTVLYYSSRSDPTVMDSSLGEESKENDNPEEPEDQISVEDTDFSNMKIEAVSAQSIFNVQDLDNICNIDFSGENGVQYFVDNSDGRYGDHCDLIVEASNDDCLIETELVFDTDYVEEVGANIELSTEEMAPVFAEIISCDICDEVFEDRKELMRHIQTMHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167906;
90% Identity: iTF_00135598;
80% Identity: -