Basic Information

Insect: Schizaphis graminum
Gene Symbol: -
Assembly: GCA_003264975.1
Location: QEWZ01007838.1:406764-420428[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.7e-06 0.00055 20.7 3.6 1 23 223 245 223 245 0.98

2 14 0.00058 0.056 14.4 3.7 1 23 251 273 251 273 0.97

3 14 0.0015 0.15 13.1 1.8 1 23 362 384 362 385 0.94

4 14 6.5e-05 0.0063 17.4 1.1 1 23 419 441 419 441 0.98

5 14 0.45 43 5.4 2.7 2 23 459 480 458 480 0.90

6 14 0.0038 0.37 11.9 0.1 2 23 491 513 490 513 0.93

7 14 0.00043 0.042 14.8 1.8 1 23 520 542 520 542 0.98

8 14 0.0047 0.45 11.6 3.0 5 23 551 569 548 569 0.93

9 14 0.0067 0.65 11.1 0.0 2 23 575 596 574 596 0.96

10 14 2.5e-05 0.0024 18.7 0.2 1 23 612 634 612 634 0.98

11 14 0.00028 0.027 15.4 0.2 3 23 642 662 640 662 0.97

12 14 1.9e-05 0.0018 19.1 0.1 1 23 668 690 668 691 0.95

13 14 0.00062 0.06 14.3 1.6 1 23 704 726 704 726 0.96

14 14 4.7e-06 0.00045 21.0 0.1 2 23 1006 1028 1005 1028 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.7e-06	0.00055	20.7	3.6	1	23	223	245	223	245	0.98
2	14	0.00058	0.056	14.4	3.7	1	23	251	273	251	273	0.97
3	14	0.0015	0.15	13.1	1.8	1	23	362	384	362	385	0.94
4	14	6.5e-05	0.0063	17.4	1.1	1	23	419	441	419	441	0.98
5	14	0.45	43	5.4	2.7	2	23	459	480	458	480	0.90
6	14	0.0038	0.37	11.9	0.1	2	23	491	513	490	513	0.93
7	14	0.00043	0.042	14.8	1.8	1	23	520	542	520	542	0.98
8	14	0.0047	0.45	11.6	3.0	5	23	551	569	548	569	0.93
9	14	0.0067	0.65	11.1	0.0	2	23	575	596	574	596	0.96
10	14	2.5e-05	0.0024	18.7	0.2	1	23	612	634	612	634	0.98
11	14	0.00028	0.027	15.4	0.2	3	23	642	662	640	662	0.97
12	14	1.9e-05	0.0018	19.1	0.1	1	23	668	690	668	691	0.95
13	14	0.00062	0.06	14.3	1.6	1	23	704	726	704	726	0.96
14	14	4.7e-06	0.00045	21.0	0.1	2	23	1006	1028	1005	1028	0.96

Sequence Information

Coding Sequence: ATGGACACTGACTTTGTGGAAGAAATTGTGTCCATCAATTCTGGTAGCCAAACACTAGATTTTGATAGAAAGGACTCTATTTTATGTCCGGAAAATGTTAACTCTATTGTCAAGACAGAGTTATTCAGTCCGGACAATGTTAACTCTATTGTCAAGACGGAGTTCTTCAGTCCGGACGACATTGATGATGCTATGTCGTCTGACAATTGTTTAATACAAACCATTGAGCCCTCGTATTTCACCAACAGTGGTACACGCGAAAATGAGCTCAATAATATGACTAGAGCGGTCATGGAATCTGTGCCATATGCCGATGGGTTACAATACTTAGCTGCCATATCTTCATTCAGTGATAATTTTAAGGAAATGGACCCCGGGCAGCGAGTCAAACAAGAGCCTGTTGACCCTACTGATTTATTTGAGTCTAGTGATGAGGAAGTTGTCCAGCAAATGACTCAAGAGGAATACCAGGAATTTTTTGATGTACAAGAAGAAGTTGTTGTTCAAGAATGCCCCGAGCAAGAAATAATCACTCAAAGTTGGGACATGAATCGCTCTACTAATATTGACACcaTATTAGAAACAGAAGTTGAATGTATGTCATCAACTGATGATGTTGATATACCAATACCTGAAGGCGAAGAAGCTTCATCTTCTGTTAATCCATATCCATGTGATTTTTGTAGTCGGAGATTTAATCGAAAATCACATCTTATGAATCATATGGTTACTCATCAATCTGAGCGTCCTTTTTGTTGTGCATTATGCGGTGTTCGTTATCGACGTAAATGTGATTTAGCCAATCATATGAAAATTCATATTGGTCCTGATAATCAATCAGATAGTGGTttagataACCAAAATGTATCTGTTACAAAAGTAATGAACAAATTAATGTTCGTGGATCCAATACATAGAAGGAGTGTTACACCTGGTGATGATTCTGAAGATAAAGGAGACACATATCAAGAACCAAATACAAAAAATCGTGGCCGTGGTAAAGGCCGCGGTAGAGGAAAAGGCCGTCCAATGAAAGATCGGTTAATTACTCTTGGTTGGAATTCAGAACTTTACTCAAAACCACATACGTGTAACCCATGTGGAATTTCATTTACACGTGAAAAAGCACTTCTTAATCATGCTCGTCTTCATCATATTGATGATGGTGTAAATATTGTGACTACTCAAAAATCAAATTCAGATAGTTATGAGCTTACAATATTAGCTAATTCTAAATCCAGTGATGTGACTTCTTATTCTTGTGATTCATGTGGAGCAGTATTTGatagatttgattttttaaaacgtcatcaaaggCAGCATATGAAAAAAGAACTTGGAAATGCCGAAGAAGAAACATATGAAGAAGCGCATATGTGTATACATTGTGGATTGTTCTTTAAGTCTATGTCAGAGTTAGATATGCATACTGAGCAACATTTGATTCCTACAAACATTTCTgaaaaatcaaaatgtttagtttGTGGTGAAACATTTGATAGTACAGATGAGCTGTCTGATCATGTGTCTCAAATTCACACTGATTCATTATCTGAATATTCGTGTAAACTTTGTGGAAAACTATGCAAAGACGATAAAGCTCTccaaaaacatttaatgattCATGACACGtctgataataattgtattatgtgtGGTAAAAGATTTCATTCCAGAGCACGTCTTAAACGtcatatGGTAACTCATCGAGAAAAAGGAGTAGTTTGTGACATTTGCGGTGAAGAAGTAGCTGATAAACGAGCACTCATTAATCATAAAGCCAGTCATGCAAATACTGTTAGTATTTCACGAAATTCAAtgactgaaaaaatatttccttGTACTAGTTGTGGAAAAgtatttggATCTAGATCATCTCAACAAATACACATACGAATACATACAGGAGAACGGCCTTATGGTTGTAGATATTGTAATAAAGCTTTTGCTGATGGTGGTACTCTTCGAAAACATGAACGAATACATACTGGTGAAAAGCCATATGCTTGTCCTGTCTGCCCAAAGGCATTCAATCAAagagttgTATTGCGTGAACATATACGAGCACATCATGCTGGAACTGAGGCAAAAGGTGGTCaagtaaatttttatgaatgtaaAGTGTGTGGATATTTGTTCCGATCTTCAATGGAGCTTTGTTCACATTTAGTTCAGCACAGTGATGACAATACTAAACGATCTAGAGTAGTACctATTGGACCTCGCAAATATAAGCGTCGTAGCAAGTTGGGTAATCGAAAAGATACGTGGTGCTTAGTAGAAAAAGTATTTACAGTTATGTCAGGGCAGTCCGACACAGAGAGCTGTGAAGATGAACCCATGCCTACAGTAGAAGAGCAAGCAGTACAATCAATAATAGAACAGGATGATATGCCTTACAATCCTCCAACTATAACTCCTCCAAGTCCTCCTAGTAAGTCTCCagttaaaacatacaaaattgTTAATGGCAGGTTAGTAAAAAGTGAACAAAAGTCTTCTAAACAAGGTTCAAATGAATCAAAACACACAGTTCCCAAGCCAGAATCTATACCAAAAAAGCATAGCTTTGTGCTTAAAGATGGAGAGTGCACTAGAACATGTTCAACTGTTCTTTATTATTCTTCAAAATCTGATCCTACAGTTATGGATTCTTCATTAGGAGAGGAATCCAAAGAAAATGATAATCCAGAAGAACCTGAAGATCAGATATCTGTAGAGGATACAGATTTTAGTAACATGAAGATCGAGGCAGTTAGTGCCCAGtcaatatttaatgtacaagATTTAGACAACATATGCAACATTGATTTTTCTGGTGAAAATggagtacaatattatgtagataattcTGATGGTCGATATGGTGATCATTGTGATTTAATAGTGGAAGCTTCAAATGATGATTGTTTGATTGAAACAGAACTAGTGTTTGATACAGATTATGTTGAGGAGGTTGGTGCTAACATTGAGCTGAGCACTGAAGAAATGGCACCTGTTTTTGCAGAAATTATTTCTTGTGATATTTGCGATGAAGTATTTGAGGATAGAAAGGAACTTATGAGACACATTCAAACTATGCACATTGGATAA
Protein Sequence: MDTDFVEEIVSINSGSQTLDFDRKDSILCPENVNSIVKTELFSPDNVNSIVKTEFFSPDDIDDAMSSDNCLIQTIEPSYFTNSGTRENELNNMTRAVMESVPYADGLQYLAAISSFSDNFKEMDPGQRVKQEPVDPTDLFESSDEEVVQQMTQEEYQEFFDVQEEVVVQECPEQEIITQSWDMNRSTNIDTILETEVECMSSTDDVDIPIPEGEEASSSVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPFCCALCGVRYRRKCDLANHMKIHIGPDNQSDSGLDNQNVSVTKVMNKLMFVDPIHRRSVTPGDDSEDKGDTYQEPNTKNRGRGKGRGRGKGRPMKDRLITLGWNSELYSKPHTCNPCGISFTREKALLNHARLHHIDDGVNIVTTQKSNSDSYELTILANSKSSDVTSYSCDSCGAVFDRFDFLKRHQRQHMKKELGNAEEETYEEAHMCIHCGLFFKSMSELDMHTEQHLIPTNISEKSKCLVCGETFDSTDELSDHVSQIHTDSLSEYSCKLCGKLCKDDKALQKHLMIHDTSDNNCIMCGKRFHSRARLKRHMVTHREKGVVCDICGEEVADKRALINHKASHANTVSISRNSMTEKIFPCTSCGKVFGSRSSQQIHIRIHTGERPYGCRYCNKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGTEAKGGQVNFYECKVCGYLFRSSMELCSHLVQHSDDNTKRSRVVPIGPRKYKRRSKLGNRKDTWCLVEKVFTVMSGQSDTESCEDEPMPTVEEQAVQSIIEQDDMPYNPPTITPPSPPSKSPVKTYKIVNGRLVKSEQKSSKQGSNESKHTVPKPESIPKKHSFVLKDGECTRTCSTVLYYSSKSDPTVMDSSLGEESKENDNPEEPEDQISVEDTDFSNMKIEAVSAQSIFNVQDLDNICNIDFSGENGVQYYVDNSDGRYGDHCDLIVEASNDDCLIETELVFDTDYVEEVGANIELSTEEMAPVFAEIISCDICDEVFEDRKELMRHIQTMHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167906;
90% Identity: iTF_00135598;
80% Identity: -