Basic Information

Insect: Aphis craccivora
Gene Symbol: -
Assembly: GCA_009835225.1
Location: VUJU01000805.1:8755-17642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.6e-06 0.00063 20.8 3.6 1 23 210 232 210 232 0.98

2 14 0.00057 0.064 14.5 3.7 1 23 238 260 238 260 0.97

3 14 0.0015 0.17 13.2 1.8 1 23 349 371 349 372 0.94

4 14 6.4e-05 0.0072 17.4 1.1 1 23 406 428 406 428 0.98

5 14 0.53 59 5.1 1.9 2 23 446 467 445 467 0.90

6 14 0.04 4.5 8.6 0.1 2 23 478 500 477 500 0.91

7 14 0.0032 0.36 12.1 2.0 2 23 508 529 508 529 0.97

8 14 0.0046 0.51 11.6 3.0 5 23 538 556 535 556 0.93

9 14 0.0093 1 10.6 0.0 3 23 563 583 561 583 0.95

10 14 2.5e-05 0.0028 18.7 0.2 1 23 599 621 599 621 0.98

11 14 0.00072 0.08 14.1 0.2 3 23 629 649 627 649 0.97

12 14 1.8e-05 0.002 19.2 0.1 1 23 655 677 655 678 0.95

13 14 0.0006 0.068 14.4 1.6 1 23 691 713 691 713 0.96

14 14 4.6e-06 0.00051 21.0 0.1 2 23 989 1011 988 1011 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.6e-06	0.00063	20.8	3.6	1	23	210	232	210	232	0.98
2	14	0.00057	0.064	14.5	3.7	1	23	238	260	238	260	0.97
3	14	0.0015	0.17	13.2	1.8	1	23	349	371	349	372	0.94
4	14	6.4e-05	0.0072	17.4	1.1	1	23	406	428	406	428	0.98
5	14	0.53	59	5.1	1.9	2	23	446	467	445	467	0.90
6	14	0.04	4.5	8.6	0.1	2	23	478	500	477	500	0.91
7	14	0.0032	0.36	12.1	2.0	2	23	508	529	508	529	0.97
8	14	0.0046	0.51	11.6	3.0	5	23	538	556	535	556	0.93
9	14	0.0093	1	10.6	0.0	3	23	563	583	561	583	0.95
10	14	2.5e-05	0.0028	18.7	0.2	1	23	599	621	599	621	0.98
11	14	0.00072	0.08	14.1	0.2	3	23	629	649	627	649	0.97
12	14	1.8e-05	0.002	19.2	0.1	1	23	655	677	655	678	0.95
13	14	0.0006	0.068	14.4	1.6	1	23	691	713	691	713	0.96
14	14	4.6e-06	0.00051	21.0	0.1	2	23	989	1011	988	1011	0.96

Sequence Information

Coding Sequence: ATGGACACTGACTTTGTGGAAGAAATTGTGTCCATCAATTCTGGTAGTCAAACACTAGATTTTGATAGAAAGGACTCTATTTTATGTCCAGACGGTGTTGTTAACTCTATTGTCAAGACCGAGTTTTTCAGTCAGGACGACATTGATGATGCTATGTCGTCTGACAATTGTTTAATACAAACCATTGAGTCCTCGTATTTCACCAACAGTGGTACACGCGAAAATGAGCTCAATAATATGACTAGAGCGGTCATGGAATCTGTGCCATATGCCGATGGGTTACAATACTTAGCTGCCATATCTTCATTCAGTGATAATTTTAAGgaAATGGATTCAGGGCAGCAAATTAAACAAGAGCCTGTTGACccaaatgatttatttgagTCAAGTGACGAGGAAGTTGTCCAACAAATGAGCCAAGAGGAATATCAAGAATTTTTTGATGTCCAAGAAGAAGTTGTTGTTCAAGAATGCCCCGAGCAAGAGATAATCACTCAAAGTTGGGACATGAATCGCTCTACCAATATTAACACCATATTAGAAACAGAAGTTGAATGTATGTCATCAACTGATGATGTTGACATACCAATACCTGAAGGCGAAGAAGCTTCATCTTCTGTTAATCCATATCCATGTGATTTTTGTAGTCGGAGATTTAATCGAAAATCACATCTTATGAACCATATGGTTACCCATCAATCTGAGCGTCCCTTTTGTTGTGCATTATGCGGTGTTCGTTATCGACGTAAATGTGATTTAGCTAATCATATGAAAATTCATATTGGTCCTGATAATCAATCAGATAGTGgtttagataatCAAAATGTATCTGTTACAAaagtaatgaataaattaatgttcgtGGATCCAGTACATAGAAGGAGTGTTACACCTGGTGATGATTCTGAGGACAAAGGAGACACTTTTCAAGAACCAAGTACAAAAAATCGTGGCCGTAGTAAAGGTCGGGGTAGAGGAAAAGGTCGTCCAATGAAAGACCGCTTAATTACTCTTGGTTGGAATTcagaaatttattcaaaaccaCATACATGTAACCCATGTGGAATTTCATTTACACGTGAAAAAGCACTTCTTAATCATGCTCGTCTTCATCATATTGATGATggtgtaaatattgtaactactcaaaaatcaaattcagATAGTTATGAGCTTACAATATTGGCTAATTCTAAATCAAGTGATGTGACTACCTATTCTTGTGATTCATGTGGAGCAGTATTTGAcagatttgattttttaaaacgtcaTCAAAGGCAGCATATGAAAAAAGAACTTGGAAATGTTGAAGAAGAAATTTATGAAGAAGCGCATATGTGTATACATTGTGGATTGTTCTTTAAGTCTATGCCTGAGTTAGAAATGCATACTGATCAACATTTGATTCCTACTAATATTTCTgaaaaatcaaaatgtttagcTTGTGGTGAAACATTTGATAGTACAGACGAGTTGTCTGATCATGTGTCTCAAATTCATACCGAATCATTATCCGAAAATTCTTGTAAACTTTGTGGAAAACTATGCAAAGATGATAAAGCTCtccaaaaacatttaatggtTCATGACACGtctgataataattgtataatgtgtGGTAAAAGATTTCATTCCAGAGCACGTCTTAAACGtcATATGGTAACTCATCGAGAAAAAGGAGTTATTTGTGACATTTGTGGTGAAGAAGTAGCAGATAAACGGGCACTCATTAATCATAAAGCCAGTCATGCAAATACTGTTAGTATTTCACAAAATTCACTGACTGAAAAAGTATTTCCATGTACTAGTTGTGGTAAAgtatttggaTCTAGATCATCTCAACAAATACACATACGAATTCATACTGGAGAAAGGCCTTACGGTTGTAGATACTGTAGCAAAGCTTTTGCTGATGGCGGTACTCTTCGAAAACATGAACGAATTCATACTGGAGAAAAGCCATACGCTTGTCCTGTCTGTCCAAAAGCATTCAATCaaagagttGTATTGCGTGAACATATACGAGCACATCATGCTGGAACTGAGGCTAAGGGTGGCcaagtaaatttttatgaatgtaaAGTATGTGGATATTTGTTCCGATCATCAATGGAGCTTTGTTCACATTTAGTTCAGCACAGTGATGAAAATACCAAAAGATCTAGAGTAGTacctGTTGGACCTCGCAAGTATAAGCGTCGCAGCAAGTTGGGTAATCGAAAAGACACATGGTGCTTAGTAGAAAAAGTGTTCACAGTTATGTCAGGACAGTCAGACACTGAGAGCTGTGAAGACGAACCCATGCCTACAGTAGAAGAGCAAGCCGTACAATCAATAATGGAACAAAATGATATGCCTTATGATCCACCTACTATAACTAGTCCTCCTAGTAAGTCTCCCgttaaaacatacaaaattgTTAATGGCAAGTTACTGAAAAGTGAACAAAAGTCTTCTAAACAAGTTTCATATGAATTAAAACACACGATTCCCAAGTTAGAACCTGTACCAAAAAAGCCTAGTTTTGTGCTTAAAGATGGCGAGTGCACTAGAACTTGTTCAACTGTTCTTTATTATTCTTCAAGATCTGATCCCACAGCTATGGATTCATCATTAGGAGAGGAATCAAAAGAAAATGATAATCCAGAAGAACCCGAAGACCAAATATCTGTAGAGGATACagattttactaatattaagaTTGAGCCAGTTAGTGACCagtcaatatttaatgtacacGATTTAGACAACATATGCAACATTGATTTTTCTGGTGAAAAtgaagtacaatattatgtacagaatACTGATGATGGATATGGCGATCAATGTGAATTGATTCTGGAATCTTCAAATGATGATTGCTTGATTGAAACAGTGTTTGATACAGAGTATGTTGAGGAGGTCGGTGCTAACATTGAACTGAGTACTGAAGAAATGGCACCTGTATTTGCAGAAATTATTTCTTGTGATATTTGCGATGAAGTATTTGAGGATAGAAAGGAACTTATGAGACACATTCAAACTATGCACATTGGATAA
Protein Sequence: MDTDFVEEIVSINSGSQTLDFDRKDSILCPDGVVNSIVKTEFFSQDDIDDAMSSDNCLIQTIESSYFTNSGTRENELNNMTRAVMESVPYADGLQYLAAISSFSDNFKEMDSGQQIKQEPVDPNDLFESSDEEVVQQMSQEEYQEFFDVQEEVVVQECPEQEIITQSWDMNRSTNINTILETEVECMSSTDDVDIPIPEGEEASSSVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPFCCALCGVRYRRKCDLANHMKIHIGPDNQSDSGLDNQNVSVTKVMNKLMFVDPVHRRSVTPGDDSEDKGDTFQEPSTKNRGRSKGRGRGKGRPMKDRLITLGWNSEIYSKPHTCNPCGISFTREKALLNHARLHHIDDGVNIVTTQKSNSDSYELTILANSKSSDVTTYSCDSCGAVFDRFDFLKRHQRQHMKKELGNVEEEIYEEAHMCIHCGLFFKSMPELEMHTDQHLIPTNISEKSKCLACGETFDSTDELSDHVSQIHTESLSENSCKLCGKLCKDDKALQKHLMVHDTSDNNCIMCGKRFHSRARLKRHMVTHREKGVICDICGEEVADKRALINHKASHANTVSISQNSLTEKVFPCTSCGKVFGSRSSQQIHIRIHTGERPYGCRYCSKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGTEAKGGQVNFYECKVCGYLFRSSMELCSHLVQHSDENTKRSRVVPVGPRKYKRRSKLGNRKDTWCLVEKVFTVMSGQSDTESCEDEPMPTVEEQAVQSIMEQNDMPYDPPTITSPPSKSPVKTYKIVNGKLLKSEQKSSKQVSYELKHTIPKLEPVPKKPSFVLKDGECTRTCSTVLYYSSRSDPTAMDSSLGEESKENDNPEEPEDQISVEDTDFTNIKIEPVSDQSIFNVHDLDNICNIDFSGENEVQYYVQNTDDGYGDQCELILESSNDDCLIETVFDTEYVEEVGANIELSTEEMAPVFAEIISCDICDEVFEDRKELMRHIQTMHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167906;
90% Identity: iTF_00135598;
80% Identity: -