Psmi017511.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- Jrkl
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000006.1:40570697-40572562[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-09 1e-06 30.6 0.0 1 42 15 56 15 59 0.85
Sequence Information
- Coding Sequence
- aTGCCAAGAAATCGTCAAAGGACCACCGCTAAAGCGGCTTGGACAGAAGAAAACCTTCAATCTGCTAAAACTGCGATTGAAGGAGGTTTGTCCAAAAGAAAAGCCGCAAAACAATATAACATACCATTTACTACTTTGAGAGATCGACTAAAAAATGAAAACATGAGCAACCCAAGACTAGGACGCAAGCCTGTTTTCACCCAACAGCAAGAATCTGAAATTGCTGAACAAGTTAAGATGCTGGGTTCGCTATACTATGGACTCAATGTCGCAGATTTGCGTAAACTTGTTTATAAATATGCTGAGCtcaacaatattaaaaacaattttgatCAAAGCAGCAAAACAGCTGGATTGGATTGGGTACACGCCTTTATGAGACGCAATCCTTCAGTTTCTATACGAAAAGCTGAAGCGACAAGCTTAAATAGAATTTCTGCCTTCAACAAAGAAGAAGTAACACATTTCTATGATAAGCTTGGGGACTTAATGGAAAAACATAAGTTTATTCCAAACAACATTTACAATGCTGACGAAACTGGTATCACCACGGTGACAGACCCAGGAAAAGTCCTCGCCGAAAAAGGACAAAGAAGAGTCGGATCTGTTACAAGCGGCGAACGAGGAAGCAACATAACAGTTATGTGTGCGATGAGTGCAGCCGGAAACTTTATACCGCCTATGTTTATTTTTGCCAGACAGAGAATGACGCCTTTATTAGAAAAAGCTGGTGCATTATACACCAACTCTAAAAATGGCTGGATAAACGAAGATTTATTTGTCACTTGGCTCAAACATTTCGCAGCATTTGCTAAGCCTACCCATGAATCACCCGTGTTGTTAATTCTGGACAATCACAGCAGTCACATTTCCCTTCAAGCTTTTAATTTTTGCAAAGAAAACCACATCACAATGCTTTCCATTCCACCACACAGTTCTCACAGAACACAGCCGCTGGATGTGTCTTTTTATGGGCCGCTGAAAGCCACTTATAGGCATGAATGCAACAGGTACATAAAGACACATTTAATGTCTAAAATAACTCCTTACGATGTTGTAGGTCTTTTCAATAAAGCATATGTACAAGTAGCGAATATAAGTAAAGCAGAATCTGGATTTCGAGCAACGGGAATTTACCCATTGGACCCAAATGTTTTCACTGATCAAGATTTTCTGGCAGCGTCGCTGATGGCACAAGAATCGGTACAAATCGCCGAAAATCAAGACCCAAATGTCAAGAATTTTGAAAATGCGCAGTCTAATGGTATGGCCATAACTTCAGGACATATATCTCCTTTGGCAGGACCATCAAATAAGGATCAATGCTCTGAATCTGTTTTGGCAGTTGCTTGTAACCAAGAACTTGTTGATGACCAAAGAACTCTGATATCTTTTGCTGCTATAGCTACGACACCAACTATTGCACCATCTTCTAAGCCAGGTCAAAGAAAGCGAAAACAACATGCTACCATATTAACTGCGACtcctatgaaaattattttagaggataaagaaaagaaaaaaatagcgAAACTCAATAAGACTGGAAAAGATGATAAATCAAGACTAAAACAAGTTGTTAAAGAAAAGAAGAACAAACATATGAAACAAAAATCTTACAAGAGAAAAATTTTACAAGAAAGTTCTTCAGAGAGTGAAGATGAAGAGCACCTTTGTGACGATGACAGTAATGACGAAATTAATGTGGATgatgaaaattataacaaatgTATTTTTTGCGAAGAATTTGGAAAAAATAACAAGTTGTGGTATCGCTGCACTATCTGCGGACTGTGGGCTCATGCTATATGTTCAGGGTGGGATTCGCCAGATGGATACATCTGTGATTTATGtgtccaaaaataa
- Protein Sequence
- MPRNRQRTTAKAAWTEENLQSAKTAIEGGLSKRKAAKQYNIPFTTLRDRLKNENMSNPRLGRKPVFTQQQESEIAEQVKMLGSLYYGLNVADLRKLVYKYAELNNIKNNFDQSSKTAGLDWVHAFMRRNPSVSIRKAEATSLNRISAFNKEEVTHFYDKLGDLMEKHKFIPNNIYNADETGITTVTDPGKVLAEKGQRRVGSVTSGERGSNITVMCAMSAAGNFIPPMFIFARQRMTPLLEKAGALYTNSKNGWINEDLFVTWLKHFAAFAKPTHESPVLLILDNHSSHISLQAFNFCKENHITMLSIPPHSSHRTQPLDVSFYGPLKATYRHECNRYIKTHLMSKITPYDVVGLFNKAYVQVANISKAESGFRATGIYPLDPNVFTDQDFLAASLMAQESVQIAENQDPNVKNFENAQSNGMAITSGHISPLAGPSNKDQCSESVLAVACNQELVDDQRTLISFAAIATTPTIAPSSKPGQRKRKQHATILTATPMKIILEDKEKKKIAKLNKTGKDDKSRLKQVVKEKKNKHMKQKSYKRKILQESSSESEDEEHLCDDDSNDEINVDDENYNKCIFCEEFGKNNKLWYRCTICGLWAHAICSGWDSPDGYICDLCVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158856; iTF_01158853; iTF_01158857; iTF_01158858; iTF_01388399; iTF_01187440; iTF_01544816; iTF_01158804; iTF_01437910; iTF_01437911; iTF_00443931; iTF_01172289; iTF_01440961; iTF_00123299; iTF_00123300; iTF_00122311; iTF_00122312; iTF_00761605; iTF_00649037; iTF_01170510; iTF_01155023; iTF_00256816; iTF_01028208; iTF_01093968; iTF_01023793; iTF_00444033; iTF_00040738; iTF_00040737; iTF_00432066; iTF_00432067; iTF_00433070; iTF_00695431; iTF_00212367; iTF_01438840; iTF_00697273; iTF_01152059; iTF_01152058; iTF_00146325; iTF_01507138; iTF_00147383; iTF_00147280; iTF_01121527; iTF_01152056; iTF_00751995; iTF_01118235; iTF_01158779; iTF_01516285; iTF_00420478; iTF_01016571; iTF_01016572; iTF_01016573; iTF_00114047;
- 90% Identity
- iTF_01158856;
- 80% Identity
- -