Stip011094.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- Jrkl
- Assembly
- GCA_947623395.1
- Location
- OX392434.1:1824177-1826051[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.8e-10 7.6e-07 29.0 0.0 2 42 16 56 15 59 0.78
Sequence Information
- Coding Sequence
- atgccaagaaatcgtcaaaggaccaccgctaaagCGGCTTGGACCGAAGAAGACCTTCAATTTGCTAAAACTGCGATTGAAGGAGGTTTGTCCAAAAGAAAAGCCGCAACACAATATAACATACCATTTACTACTTTGAGAGATCGTCTAAAAAATGAAAACATGACCAACCCAAGACTAGGTCGCAAGCCCGTTTTCACCCAAGAGCAAGAAATTGAAATTGCTAAACAAGTTAAGTTGCTGGGTTCGCTTTACTATGGACTCAATGTCGCAGATTTGCGTAAGCTTGTATATAAATATGCTGAGATCAATAATATCAAAAACAATTTTGATCAAGGCAACAAAACAGCTGGACTGGATTGGGTCCACGCCTTTATGAGACGCAATCCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAGCTTAAATAGAATTTCTGCTTTCAACAAAGAAGAAATAACACATTTCTATGATAAACTTGGCGACTTAATGGAAAAACATAAATTTATTCCCAACAACATTTACAATGCTGACGAAACTGGTATCACCACTGTGACAGACCCAGGAAAAGTGCTCACCGAAAAGGGACAAAGAAGAGTTGGATCTGTTACAAGTGGCGAACGAGGAAGCAACATAACAGTTATGTGTGCGATGAGTGCAGCCGGGAACTTCATACCGCCCATGTTTATTTTTGCCAGACAGAGAATGACGCCTTTATTAGAAAAAGATGGACCAGCTGGTGCATTTTACACTAACTCTAAAAATGGCTGGATAAACGAAGACTTATTTGTCACTTGGCTCAAACATTTCACAGCATTTGCTAAGCCTACTCAAGAATCACCTGTGTTGTTGATTCTGGACAATCACAGCAGTCACATTTCCCTTCAAGCTTTTAATTTTTGCAAGGAAAACCACATCATAATGCTGTCCATTCCACCACACAGTTCTCACAGAACACAGCCAATGGATGTGTCTTTTTATGGGCCGCTGAAAGCTGCTTATAGGAATGAATGCAACATTCACATGAAGACACATTTAATGTCTAAAATAACTCCATACGATGTTGCAGGTCTTTTCAATAAAGCATACGTACAAGTTGCGAATATAAGTAAAGCAGAATCTGGATTTCGAGCCACGGGAATTTACCCATTGAACCCAAATGTTTTCACTGATCAAGATTTTCTAGCAGCGTCGTTGATGGCACAAGAATCGGAACAAATCGCTGAAAACCAAGACCCAAATATCCAGAATTATGAAGATGCGCTGTCTGATGGTATGGCTATAATTTCAGGACATACATCTCCTTTGGCAGGTCCATCAAACAAGGATCAATGCTCTGAATCCGTTGTGGCAGTTGCTTGTAACCAAGAACTTGTTGATGAGCAAAGAACTTCGGTATCCTTTTCTACTATAGCAACGACACCAACTATTGCACAATCTTCTAAGCCACGACAAACAAAGCGAAAACAACATGCTACCATATTAACTGCAACTCCTATGAAAATTATTTTAGAGGATAAAGAAAAGAAAAAAATAGCGAAACTCAATAAGACTGGAAAAGATGATAAATCAAGACCAAAAAAAGTTGTCAAAGAAAAGAAGAACAAACATATGAAACGAAAATCATACAAGAGAAAAATTTTACAGGAAAGTTCTTCAGAGAGTGAAGATGAAGAGCACCTTTGCGACGATGACAGTGATGACGAAATGAATGTTGATGATGATTATTATAACAAATGTGTTATTTGCGAAGAATTTGGAAAAAATAACGAGTTGTGGTATCGCTGCACCATCTGCGGACTGTGGGCTCATGCTATATGTTCAGGATGGGATTCACCAAATGGATATATCTGTGATTTATGTGTCCAAAAATAA
- Protein Sequence
- MPRNRQRTTAKAAWTEEDLQFAKTAIEGGLSKRKAATQYNIPFTTLRDRLKNENMTNPRLGRKPVFTQEQEIEIAKQVKLLGSLYYGLNVADLRKLVYKYAEINNIKNNFDQGNKTAGLDWVHAFMRRNPSVSIRKAEATSLNRISAFNKEEITHFYDKLGDLMEKHKFIPNNIYNADETGITTVTDPGKVLTEKGQRRVGSVTSGERGSNITVMCAMSAAGNFIPPMFIFARQRMTPLLEKDGPAGAFYTNSKNGWINEDLFVTWLKHFTAFAKPTQESPVLLILDNHSSHISLQAFNFCKENHIIMLSIPPHSSHRTQPMDVSFYGPLKAAYRNECNIHMKTHLMSKITPYDVAGLFNKAYVQVANISKAESGFRATGIYPLNPNVFTDQDFLAASLMAQESEQIAENQDPNIQNYEDALSDGMAIISGHTSPLAGPSNKDQCSESVVAVACNQELVDEQRTSVSFSTIATTPTIAQSSKPRQTKRKQHATILTATPMKIILEDKEKKKIAKLNKTGKDDKSRPKKVVKEKKNKHMKRKSYKRKILQESSSESEDEEHLCDDDSDDEMNVDDDYYNKCVICEEFGKNNELWYRCTICGLWAHAICSGWDSPNGYICDLCVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158766;
- 90% Identity
- iTF_01158856;
- 80% Identity
- -