Psmi032140.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- Jrkl
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000011.1:44434832-44436706[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 3.8e-05 25.6 0.0 1 38 15 51 15 58 0.80
Sequence Information
- Coding Sequence
- aTGCCAAGAAATCGTCAAAGGACCACCGCTAAAGCGGCTTGGACAGAAGAAAACCTTCAATCTGCTAAAACTGCGATTGAAGGAGGTTTGTCCAAAAGAAAAGCCGCAAAACAATATAACATACCATTTACTACTTTGAGAGATCTACTAAAAGATGAAAACATGAGCAACCCAAGACTAGGACGCAAGCCTGTTTTCACCCAACAACAAGAATCTGAAATTGCTGAACAAGTTAAGATGCTGGGTTCGCTATACTATGGACTCAATGTCGCAGATTTGCGTAAACTTGTTTATAAATATGCTGAGCtcaacaatattaaaaacaattttgatCAAAGCAGCAAAACAGCTGGATTGGATTGGGTACACGCCTTTATGAGACGCAATCCTTCAGTTTCTATACGCAAAGATGAAGCGACAAGCTTAAATAGAATTTCTGCCTTCAACAAAGAAGAAGTAACACATTTCTATGATAAGCTTGGGGACTTAATGGAAAAACATAAGTTTATTCCAAACAACATTTACAATGCTGACGAAACTGGTATCACCACGGTGACAGACCTAGGAAAAGTGCTCGCCAAAAAAGGACAAAGAAGAGTCGGATCTGTTACAAGCGGCGAACGAGGAAGCAACATAACAGTTATGTGTGCGATGAGTGCAGCCGGAAACTTTATACCGCCTATGTTTATTTTTGCCAGACAGAGAATGACGCCCTTATTAGAAAAAGATGGACCAGCTGGTGCATTATACACCAACTCTAAAAATGGCTGGATAAACGAAGATTTATTTGTCACTTGGCTCAAACATTTCGCAGCATTTGCTAAGCCTACCCATGAATCACCCGTGTTGTTAATTCTGGACAATCACAGCAGTCACATTTCCCTTCAAGCTTTTAATTTTTGCAAAGAAAACCACATCACAATGCTTTCCATTCCACCACACAGTTCTCACAGAACACAGCCGCTGGATGTGTCTTTTTATGGGCCGCTGAAAGCCACTTATAGGCATGAATGCAACAGGTACATGAAGACACATTTAATGTCTAAAATAACTCCTTACGATGTTGTAGGTCTTTTCAATAAAGCATATGTACAAGTTGCGAATATAAGTAAAGCAGAATCTGGATTTCGAGCCACGGGAATTTATCCATTGGACCCAAATGTTTTCACTGATCAAGATTTTCTGGCAGCGTCGCTGATGGCACAAGAATCGGTACAAATCGCTGAAAATCAAGACCCAAATGTCAAGAATTTTGAAAATGCGCAGTCTAATGGTATGGCCATAACTTCAGAACATATATCTCCTTTGGCAGGACCATCAAATAAGGATCAATGCTCTGAATCTGTTTTGGCAGTTGCTTGTAACCAAGAACTTGTTGATGAGCAAAGAACTCTGATATCTTTTGCTGCTATAGCTACGACACCAACTATTGCACCATCTTCTAAGCCAGGTCAAAGAAAGCGAAAACAACATGCTACCATATTAACTGCGACtcctatgaaaattattttagaggataaagaaaagaaaaaaatagcgAAACTCAATAAGACTGGAAAAGATGATAAATCAAGACTAAAACAAGTTGTTAAAGAAAAGAAGAACAGACATATGAAACAAAAATCTTACAAGAGAAAAATTTTACAAGAAAGTTCTTCAGAGAGTGAAGATGAAGAGCACCTTTGTGACGATGACAGTAATGACGAAATTAATGTGGATgatgaaaattataacaaatgTATTTTTTGCGAAGAATTTGGAAAAAATAACGAGTTGTGGTATCGCTGCACTATCTGCGGACTGTGGGCTCATGCTATATGTTCAGGGTGGGATTCGCTAGATGGATACATCTGTGATTTATGtgtccaaaaataa
- Protein Sequence
- MPRNRQRTTAKAAWTEENLQSAKTAIEGGLSKRKAAKQYNIPFTTLRDLLKDENMSNPRLGRKPVFTQQQESEIAEQVKMLGSLYYGLNVADLRKLVYKYAELNNIKNNFDQSSKTAGLDWVHAFMRRNPSVSIRKDEATSLNRISAFNKEEVTHFYDKLGDLMEKHKFIPNNIYNADETGITTVTDLGKVLAKKGQRRVGSVTSGERGSNITVMCAMSAAGNFIPPMFIFARQRMTPLLEKDGPAGALYTNSKNGWINEDLFVTWLKHFAAFAKPTHESPVLLILDNHSSHISLQAFNFCKENHITMLSIPPHSSHRTQPLDVSFYGPLKATYRHECNRYMKTHLMSKITPYDVVGLFNKAYVQVANISKAESGFRATGIYPLDPNVFTDQDFLAASLMAQESVQIAENQDPNVKNFENAQSNGMAITSEHISPLAGPSNKDQCSESVLAVACNQELVDEQRTLISFAAIATTPTIAPSSKPGQRKRKQHATILTATPMKIILEDKEKKKIAKLNKTGKDDKSRLKQVVKEKKNRHMKQKSYKRKILQESSSESEDEEHLCDDDSNDEINVDDENYNKCIFCEEFGKNNELWYRCTICGLWAHAICSGWDSLDGYICDLCVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158766;
- 90% Identity
- iTF_01158853; iTF_01158857; iTF_01158858; iTF_01158804; iTF_01158766; iTF_01158779; iTF_01170510; iTF_00212367; iTF_00697273; iTF_01016571; iTF_01016572; iTF_01016573; iTF_01275195; iTF_01388399;
- 80% Identity
- -