Psmi028514.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- Jrkl
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000010.1:32589525-32591399[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 3.8e-05 25.6 0.0 1 38 15 51 15 58 0.80
Sequence Information
- Coding Sequence
- aTGCCAAGAAATCGTCAAAGGACCACCGCTAAAGCGGCTTGGACAGAAGAAAACCTTCAATCTGCTAAAACTGCGATTGAAGGAGGTTTGTCCAAAAGAAAAGCCGCAAAACAATATAACATACCATTTACTACTTTGAGAGATCTACTAAAAGATGAAAACATGAGCAACCCAAGACTAGGACGCAAGCCTGTTTTCACCCAACAACAAGAATCTGAAATTGCTGAACAAGTTAAGATGCTGGGTTCGCTATACTATGGACTCAATGTCGCAGATTTGCGTAAACTTGTTTATAAATATGCTGAGCtcaacaatattaaaaacaattttgatCAAAGCAGCAAAACAGCTGGATTGGATTGGGTACACGCCTTTATGAGACGCAATCCTTCAGTTTCTATACGCAAAGATGAAGCGACAAGCTTAAATAGAATTTCTGCCTTCAACAAAGAAGAAGTAACACATTTCTATGATAAGCTTGGGGACTTAATGGAAAAACATAAGTTTATTCCAAACAACATTTACAATGCTGACGAAACTGGTATCACCACGGTGACAGACCCAGGAAAAGTGCTCGCCAAAAAAGGACAAAGAAGAGTCGGATCTGTTACAAGCGGCGAACGAGGAAGCAACATAACAGTTATGTGTGCGATGAGTGCAGCCGGAAACTTTATACCGCCTATGTTTATTTTTGCCAGACAGAGAATGACGCCCTTATTAGAAAAAGATGGACCAGCTGGTGCATTATACACCAACTCTAAAAATGGCTGGATAAACGAAGATTTATTTGTCACTTGGCTCAAACATTTCGCAGCATTTGCTAAGCCTACCCATGAATCACCCGTGTTGTTAATTCTGGACAATCACAGCAGTCACATTTCCCTTCAAGCTTTTAATTTTTGCAAAGAAAACCACATCACAATGCTTTCCATTCCACCACACAGTTCTCACAGAACACAGCCGCTGGATGTGTCTTTTTATGGGCCGCTGAAAGCCACTTATAGGCATGAATGCAACAGGTACATGAAGACACATTTAATGTCTAAAATAACTCCTTACGATGTTGTAGGTCTTTTCAATAAAGCATATGTACAAGTTGCGAATATAAGTAAAGCAGAATCTGGATTTCGAGCCACGGGAATTTACCCATTGGACCCAAATGTTTTCACTGATCAAGATTTTCTGGCAGCGTCGCTGATGGCACAAGAATCGGTACAAATCGCTGAAAATCAAGACCCAAATGTCAAGAATTTTGAAAATGCGCAGTCTAATGGTATGGCCATAACTTCAGAACATATATCTCCTTTGGCAGGACCATCAAATAAGGATCAATGCTCTGAATCTGTTTTGGCAGTTGCTTGTAACCAAGAACTTGTTGATGAGCAAAGAACTCTGATATCTTTTGCTGCTATAGCTACGACACCAACTATTGCACCATCTTCTAAGCCAGGTCAAAGAAAGCGAAAACAACATGCTACCATATTAACTGCGACtcctatgaaaattattttagaggataaagaaaagaaaaaaatagcgAAACTCAATAAGACTGGAAAAGATGATAAATCAAGACTAAAACAAGTTGTTAAAGAAAAGAAGAACAGACATATGAAACAAAAATCTTACAAGAGAAAAATTTTACAAGAAAGTTCTTCAGAGAGTGAAGATGAAGAGCACCTTTGTGACGATGACAGTAATGACGAAATTAATGTGGATgatgaaaattataacaaatgTATTTTTTGCGAAGAATTTGGAAAAAATAACGAGTTGTGGTATCGCTGCACTATCTGCGGACTGTGGGCTCATGCTATATGTTCAGGGTGGGATTCGCCAGATGGATACATCTGTGATTTATGtgtccaaaaataa
- Protein Sequence
- MPRNRQRTTAKAAWTEENLQSAKTAIEGGLSKRKAAKQYNIPFTTLRDLLKDENMSNPRLGRKPVFTQQQESEIAEQVKMLGSLYYGLNVADLRKLVYKYAELNNIKNNFDQSSKTAGLDWVHAFMRRNPSVSIRKDEATSLNRISAFNKEEVTHFYDKLGDLMEKHKFIPNNIYNADETGITTVTDPGKVLAKKGQRRVGSVTSGERGSNITVMCAMSAAGNFIPPMFIFARQRMTPLLEKDGPAGALYTNSKNGWINEDLFVTWLKHFAAFAKPTHESPVLLILDNHSSHISLQAFNFCKENHITMLSIPPHSSHRTQPLDVSFYGPLKATYRHECNRYMKTHLMSKITPYDVVGLFNKAYVQVANISKAESGFRATGIYPLDPNVFTDQDFLAASLMAQESVQIAENQDPNVKNFENAQSNGMAITSEHISPLAGPSNKDQCSESVLAVACNQELVDEQRTLISFAAIATTPTIAPSSKPGQRKRKQHATILTATPMKIILEDKEKKKIAKLNKTGKDDKSRLKQVVKEKKNRHMKQKSYKRKILQESSSESEDEEHLCDDDSNDEINVDDENYNKCIFCEEFGKNNELWYRCTICGLWAHAICSGWDSPDGYICDLCVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158766;
- 90% Identity
- iTF_01158856;
- 80% Identity
- iTF_01158858;