Pcor004495.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949127965.1
- Location
- OX421853.1:1731697-1741693[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-75 5.2e-71 240.0 23.4 1 265 119 378 119 401 0.89 2 2 1 2.8e+04 -6.4 14.1 120 169 417 463 374 476 0.55
Sequence Information
- Coding Sequence
- ATGGGCAATCAGTCCAAAAGTGCAACGCCTGACAATAGCGACGAGGAAAGCGGGGACGCGTTCACTGACGGAGACTTCGGTGACTCCGACGAGGAGTTACACGTAGAACGTAGCGATGACTCTAACACTACCCTTATCCCTGTTAACGAAACTGTAAATGCAGAACTAATGGAGATAGTACGCGGCGCTCGTAATGGTTTTGATGAGCTCGATAAGGTTAACGGACACAAAAGCAGTGATAGTGATTTGGAATGTCGCAGCAACGGCGAGCTCGCGATGCCTGAGGCCCGGAGGGACTCCCACGGCGAACAGAATCCTTCCATCGTTGGCATACTCGGTGGCCAGCAGGACCATGCAGAGCAGCGTctagcggcgcggcgcgcggcgcgggcggagGCGCGCGAGATACGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCTGACAAGGCCTACGACATGTACGCCGAGACGGTGGGGAGGCGCAGCGGGCCGCGGATCACAGGCCTTGCGCCGGCCGCGCTGCACTCGCCGCGGCGCGCGTCGGAGGACTCCGCCGACGACTCCTTCAACGTTAAGGATCTTAGGCACGACCTGAAAGAAGTTGAGGAGAAGTTCCGCAAGGCGATGATTCTCAACGCTCAGCTCGACAACGATAAGGCGGCTCTCGGTTACCAGCTGGAGCTGCTGAAGGACCGCATCGAGGAGCTGACGGCGGAGTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGTTCAGCCCACGAGCGGCTAAAACGCGAGCACGCGTCGCTGGAGCGCGAGCTAGTGTCGGCCCGCGAcgcggtgcgcgcgcgcgaCCTGGCCGCGGAGGGCGCCGGGTTCGCGTTCGTGgacgcggcgccggccgccAACGGGCTCAACAACAACGACGCGCCCGCGAAGCCCTCGCTCGCCCTCGTCACGCACCAGAACGAGAAGCTGCTCAACGACGCTGGGGAAGGCACGCTAGACGTGCGGTTGCAGAAGCTGCTGAGCTCGAAGCAGAGTCTGGAGGGCGAGGTGCGCCGGCTGAAGCTGCAGCTCAGCGAGGAGCAGCACAACGGCGTCTCGCGCGCCAACGACCACGACCTCGAGACGGAGCTGGAGGCGCTCCGCAAGTCGACAGCGGAAGCGaaggcgcgcgcggcgcgggcggagGCCGaggccgcgctgcaggccgcagccgccgcgcgcctCACCGCGCAGCTGTCCCGTGTCAAGGCGCAGCACGACGCCCGGGACGAGCAGGAGGAGCAACTCAAGCAAGAGCGCCGCAAGCTGCAGCGAGAGgcGAGAGAAGCCCTTAACCGAGTAGAAGAGTTAGAAACAGAAAACAGCCATCTGACGAAGCGGCTCGACAAACTGAAGAACGCGAAGTCGGCGCTACTCAAAGAGCTGTGA
- Protein Sequence
- MGNQSKSATPDNSDEESGDAFTDGDFGDSDEELHVERSDDSNTTLIPVNETVNAELMEIVRGARNGFDELDKVNGHKSSDSDLECRSNGELAMPEARRDSHGEQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRSGPRITGLAPAALHSPRRASEDSADDSFNVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTAEYAQLQREHKEKCSAHERLKREHASLERELVSARDAVRARDLAAEGAGFAFVDAAPAANGLNNNDAPAKPSLALVTHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLSEEQHNGVSRANDHDLETELEALRKSTAEAKARAARAEAEAALQAAAAARLTAQLSRVKAQHDARDEQEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_01135772; iTF_00462408; iTF_00155315; iTF_00156259; iTF_00325400;
- 80% Identity
- -