Acra003739.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947859365.1
- Location
- OX402051.1:21227521-21240627[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.31 8.7e+03 -3.7 0.0 235 280 56 102 54 103 0.73 2 3 1e-75 2.9e-71 240.8 25.8 1 265 121 380 121 405 0.89 3 3 0.29 8.1e+03 -3.6 9.2 125 165 424 468 408 478 0.47
Sequence Information
- Coding Sequence
- ATGGGCAATCAATCCAAAAGTGCAACGCCTGACAATAGCGACGAGGAAAGCGGGGACCCTTTCACTGACGGAGACTTCGGTGACTCCGATGAAGAGTTAAACGTAGAACGTATCGATGACTCTAACACTACCCTTATCCCTGTTAACGAAACTGTAACTGCAGAAGTAATGGATATAGTACGCGGCGTTCGTAATGGTTTCGATGAACACGATCACACTAAAGTTAACGGACATAAAAGCAGTGATAGTGACTTGGAATGTCGTAGCAACGGCGAGCTCGCGATGCCTGACGCCAGGAGGGACTCCCACGGCGACCAGAACCCTTCCATCGTTGGCATTCTCGGTGGTCAGCAGGATCATGCGGAGCAGCGTCTAGCGGCGCGGCGTGCGGCGCGGGCGGAGGCGCGTGAGATACGCATGCGCGAGCTCGAGCGGCAGCAGCGCGAGCAAGAGGACCATGCCGACAAGGCATACGACATGTATGCCGAGACGGTGGGGCGGCGTGCGGGCCCGCGGATCACAGGCCTCACGCCCACAGCGCTGCACTCGCCGCGGCGCGCGTCGGAGGACTCCGCCGACGACTCCTTCAATGTTAAGGATCTTAGGCACGACCTGAAGGAAGTCGAGGAGAAGTTCCGCAAGGCAATGATCCTGAACGCGCAACTGGATAATGACAAGGCCGCGCTCGGTTACCAGCTGGAGCTACTGAAGGACCGCATCGAGGAGCTGGCGGCGGAACACGCGCAGCTGCAGCGCGAGCACAAAGAGAAATGTTCAGCCCACGAGCGGCTAAAACGCGAGCACGCGTCCCTCGAGCGCGAGTTGACCGCGGCGCGTGACGCGGTGCGCGCGCGCGACGCGGCCGCCGCCGCCGCCGGGTTCGCGTTCGTTGACGCGGCGCCGGCCACCAACGGCGTCAACAACAATGACGCGCCCGCGCTGCCCGCGCTCGCGCTCGTGACGCACCAGAATGAGAAGTTGTTGAACGACGCCGGGGAAGGCACGCTAGACGTGCGGTTGCAGAAGCTGTTGAGCTCGAAGCAGAGTTTGGAAAGCGAGGTGCGGCGGCTCAAGCTCCAGCTTAGCGAGGAACAACATAACGGCGTCTCCCGAGCTAACGACCACGACCTCGAGACCGAACTGGAAGCGCTCCGCAAGGCGTCGGCGGAGGCGAAGGCGCGAGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCCGCCGCCGCGCGCCTCACCGCGCAGCTGTCGCGGGTGCGCGCGCAGCACGACGCGCGCGACGAGCAGGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGCGAGAGAAGCCCTGAACCGAGTAGAAGAGTTGGAGACAGAAAACAGTCATTTGACGAAACGGCTCGACAAACTGAAGAACGCGAAGTCGGCGCTACTCAAAGAGCTGTGA
- Protein Sequence
- MGNQSKSATPDNSDEESGDPFTDGDFGDSDEELNVERIDDSNTTLIPVNETVTAEVMDIVRGVRNGFDEHDHTKVNGHKSSDSDLECRSNGELAMPDARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGPRITGLTPTALHSPRRASEDSADDSFNVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELAAEHAQLQREHKEKCSAHERLKREHASLERELTAARDAVRARDAAAAAAGFAFVDAAPATNGVNNNDAPALPALALVTHQNEKLLNDAGEGTLDVRLQKLLSSKQSLESEVRRLKLQLSEEQHNGVSRANDHDLETELEALRKASAEAKARAARAEAEAALQAAAAARLTAQLSRVRAQHDARDEQEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_01134806;
- 80% Identity
- -