Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: lrrfip2
Assembly: GCA_037349165.1
Location: JAZBNJ010000037.1:2071530-2087286[-]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.59 1e+04 -3.6 0.0 234 280 59 106 56 107 0.66

2 3 5e-75 8.7e-71 239.6 24.2 1 265 125 386 125 415 0.88

3 3 0.4 7e+03 -3.0 8.2 127 165 432 474 416 485 0.43

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.59	1e+04	-3.6	0.0	234	280	59	106	56	107	0.66
2	3	5e-75	8.7e-71	239.6	24.2	1	265	125	386	125	415	0.88
3	3	0.4	7e+03	-3.0	8.2	127	165	432	474	416	485	0.43

Sequence Information

Coding Sequence: ATGACGCTCATCATGGGCAATCAATCAAAAAATGCAACACCTGACAATAGCGACGAGGAAAGCGGGGATGCGTTCACTGACGGAGACTTCGGTGACTCCGACGAAGAGTTACATGTTGAACGTAACGATGACTCTAACACTACCCTTATCCCTGTTAATGAAACTGTAAATGCAGAAATAATGGAGATAGTACGCGGCGCTCGTAATAGTTTCGATGAACACGATCATACTAAAGTTAACGGACATAAAAGCAGTGATAGTGACTTGGAATGTCGCAGCAACGGCGAACTCGCGATGCCTGACGCCAGGAGGGACTCCCACGGCGACCAGAACCCTTCCATCGTTGGCATTCTCGGTGGTCAGCAGGATCATGCGGAGCAGCGGCTGGCGGCGCgtcgcgcggcgcgggcggagGCGCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCCTATGACATGTATGCCGAGACGGTGGGGCGGCGCGCGGGCCCGCGGCTCTCGGGCCTCACGCCCGCGGCGCTGCACTCGCCGCGGCGCGCCTCCGAGGACTCCGCCGACGACTCCTTCAATGTCAAGGATCTTAGGCACGACCTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGTTGGACAACGACAAGGCGGCGCTCGCATACCAGCTGGAGCTGCTCAAAGACCGCATCGAGGAGCTGGCGGCGGAACACGCGCAGCTacagCGCGAGCACAAAGAGAAATGCTCGGCGCACGAGCGGCTAAAACGCGAGCACGCGTCGCTCGAGCGGGAACTAGTGGCGGCGCGGGACGCGGTGCGCGCGCGGGACGCGGCCGCCGCCGGCGCGGGCTTCGCCTTCGTggacgccgcgcccgccgccgctaCCAACGGGCTTAACAACAACGACGCGCCCGCCATGCCCGCGCTCGCCCTCGTCACGCACCAGAATGAGAAGCTGTTGAATGACGCCGGGGAAGGCACGCTGGACGTGCGGTTGCAGAAGCTGCTCAGTTCGAAGCAGAGCCTGGAGGGCGAGGTGCGTCGCCTCAAGCTGCAGCTCAGCGAGGAGCAGCACAACGGCGTCGCGCGCGCGCACGACCACGACCTCGAGACCGAGCTGGAGGCGCTGCGCAAGTCGACGGCGGAGGCGAAGGCGCGCGCCGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCCGCCGCCACGCGCCTCGCCGCGCAGCTCTCGCGCGTGCGCGCGCAGCACGACGCGCGCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGAGAGgccAGAGAAGCGTTGAACCGAGTAGAAGAGTTGGAGACAGAAAACAGTCATTTGACGAAGCGGCTCGACAAATTGAAGAATGCAAAGTCGGCGCTACTCAAGGAGCTGTGA
Protein Sequence: MTLIMGNQSKNATPDNSDEESGDAFTDGDFGDSDEELHVERNDDSNTTLIPVNETVNAEIMEIVRGARNSFDEHDHTKVNGHKSSDSDLECRSNGELAMPDARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGPRLSGLTPAALHSPRRASEDSADDSFNVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALAYQLELLKDRIEELAAEHAQLQREHKEKCSAHERLKREHASLERELVAARDAVRARDAAAAGAGFAFVDAAPAAATNGLNNNDAPAMPALALVTHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLSEEQHNGVARAHDHDLETELEALRKSTAEAKARAARAEAEAALQAAAATRLAAQLSRVRAQHDARDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00772899;
90% Identity: iTF_01134806;
80% Identity: -