Axyl014434.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947563465.1
- Location
- OX387347.1:21997840-22010385[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-76 1.9e-71 241.6 25.1 1 265 121 380 121 407 0.89 2 2 0.19 6e+03 -3.0 8.5 125 164 424 467 406 478 0.48
Sequence Information
- Coding Sequence
- ATGGGCAATCAATCCAAAAGTGCAACGCCTGACAATAGCGACGAGGAAAGCGGGGACGCGTTCACTGACGGAGACTTCGGTGACTCCGATGAAGAGTTAAACGTAGAACGTATCGATGACTCTAACACTACCCTTATCCCTGTTAACGAAACTGTAAATGCAGAAGTAATGGATATAGTACGCGGTGCTCGTAATGGTTTTGATGAACACGATCATACTAAAGTTAACGGACATAAAAGCAGTGATAGTGACTTGGAATGTCGTAGCAACGGCGAGCTCGCGATGCCTGACGCCAGGAGGGACTCCCACGGTGACCAGAACCCTTCCATCGTTGGCATTCTCGGTGGTCAGCAGGATCATGCGGAGCAGCGTCTAGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAGCTCGAGCGGCAGCAGCGCGAGCAAGAGGACCATGCCGACAAGGCATACGACATGTACGCCGAGACGGTGGGGCGGCGCGCGGGCCCGCGGATCACAGGCCTCACGCCCACAGCGCTGCATTCGCCGCGGCGCGCGTCGGAAGACTCCGCCGACGACTCCTTCAATGTTAAGGATCTTAGGCACGACCTGAAGGAAGTCGAGGAGAAGTTCCGTAAGGCAATGATCCTGAACGCGCAACTGGATAATGATAAGGCGGCGCTCGGTTACCAGCTGGAGCTACTGAAGGACCGCATCGAGGAGCTGGCGGCGGAACACGCGCAGCTGCAGCGCGAGCATAAAGAGAAATGTTCAGCCCACGAGCGGCTAAAACGCGAGCACGCGTCCCTCGAGCGCGAGTTGACCGCGGCGCGTGACGCGGTGCGCGCGCGCGACGCGGCCGCCGCTACCGCCGGGTTCGCGTTCGTTGACGCGGCGCCGGCCACCAACGGCGTCAACAACAATGACGCGCCCGCGCTGCCCTCGCTCGCGCTCGTGACGCACCAGAATGAGAAGTTGTTGAACGACGCTGGGGAAGGCACGCTAGACGTGCGGTTGCAGAAGCTTCTGAGCTCAAAGCAGAGTTTGGAGGGCGAGGTGCGGCGGCTCAAGCTCCAGCTTAGCGAGGAACAACATAACGGCGTCTCCCGGGCTAACGACCACGACCTCGAGACCGAACTGGAAGCGCTCCGCAAGTCGGCGGCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCAGGCCGCCGCCGCCACGCGCCTCGCCGCGCAGCTGTCGCGGGTGCGCGCGCAGCACGACGCGCGCGACGAGCAGGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGCGAGAGAAGCCCTGAACCGAGTAGAAGAGTTGGAGACAGAAAACAGTCATTTGACGAAACGGCTCGACAAACTGAAGAACGCGAAGTCGGCGCTACTCAAAGAGCTGTGA
- Protein Sequence
- MGNQSKSATPDNSDEESGDAFTDGDFGDSDEELNVERIDDSNTTLIPVNETVNAEVMDIVRGARNGFDEHDHTKVNGHKSSDSDLECRSNGELAMPDARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGPRITGLTPTALHSPRRASEDSADDSFNVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELAAEHAQLQREHKEKCSAHERLKREHASLERELTAARDAVRARDAAAATAGFAFVDAAPATNGVNNNDAPALPSLALVTHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLSEEQHNGVSRANDHDLETELEALRKSAAEAKARAARAEAEAALQAAAATRLAAQLSRVRAQHDARDEQEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_01134806;
- 80% Identity
- -