Phep005342.2
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963854515.1
- Location
- OY978009.1:16241260-16252758[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-74 2.7e-70 237.7 22.7 1 264 123 381 123 403 0.89 2 2 0.5 7.5e+03 -3.4 9.1 132 227 430 469 403 481 0.45
Sequence Information
- Coding Sequence
- ATGACGCTCATCATGGGCAATCAGTCCAAAAGTGCAACGCCTGACAATAGCGACGAGGAAAGCGGGGACGCGTTCACTGACGGAGATTTCGGTGACTCCGACGAGGAGTTACACGTAGAACGTAGCGATGACTCTAACACTACCCTTATCCCTGTTAACGAAACTGTAAATTCAGAAGTAATGGAGATAGTACGCGGTGCTCGTAATGGTTTTGATGAGCTCGATAAAGTTAACGGACACAAAAGCAGTGATAGTGATTTGGAATGTCGCAGCAACGGCGAGCTCGCGATGCCTGAGGCCCGGAGGGACTCCCACGGCGAACAGAATCCTTCCATCGTTGGCATACTCGGTGGCCAGCAGGACCATGCAGAGCAGCGTctagcggcgcggcgcgcggcgcgggcagAGGCGCGCGAGATACGCATGCGCGAGCTAGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCTGACAAGGCCTACGACATGTACGCCGAGACGGTGGGGCGGCGCAGCGGGCCGCGGATCGCGGGCCTCGCGCCGGCGGCGCTGCACTCGCCGCGGCGCGCGTCCGAGGACTCCGCCGACGACTCCTTCAATGTTAAGGATCTTAGGCACGACCTGAAAGAAGTCGAGGAGAAGTTCCGCAAGGCGATGATTCTCAACGCCCAGCTCGACAACGACAAGGCGGCTCTCGGTTACCAGCTGGAGCTGCTGAAGGACCGCATCGAGGAGCTGACGGCGGAGTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGTTCAGCCCACGAGCGGCTAAAACGCGAGCACGCGTCGCTGGAGCGCGAGCTGGTGTCGGCCCGCGACGCGGTGCGCGCGCGCGACCTGGCCGCGGAGGGCGCGGGGTTCGCGTTCGTggacgccgcgcccgccgcgaaCGGGCTCAACAACAACGACGCGCCCGCGAAGCCCTCGCTCGCGCTCGTCACGCACCAGAACGAGAAGCTGCTCAACGACGCCGGGGAAGGCACGCTAGATGTGCGGTTGCAGAAGCTGCTGAGCTCGAAGACGAGCCTGGAGGGCGAGGTGCGCCGCCTGAAGCTGCAGCTCAGCGAGGAGCAGCACAACGGCGTCGCGCGCGCCAACGACCACGACCTCGAGACCGAGCTGGAGGCGCTCCGCAAGTCGACGGCGGAGGCGAAGGCGCGCGCGGTGCGGGCGGAGGCCGAGGCGGCGCTGCaggccgcggccgccgcgcgcctCGCCGCGCAGCTGTCGCGCCTCCGGGCGCAGCACGACGCGCAAGGCGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGgcgAGAGAAGCCCTGAACCGAGTAGAGGAGTTAGAGACAGAAAACAGCCATCTGACGAAGCGGCTCGACAAATTGAAGAACGCGAAGTCGGCGCTACTCAAAGAGCTGTGA
- Protein Sequence
- MTLIMGNQSKSATPDNSDEESGDAFTDGDFGDSDEELHVERSDDSNTTLIPVNETVNSEVMEIVRGARNGFDELDKVNGHKSSDSDLECRSNGELAMPEARRDSHGEQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRSGPRIAGLAPAALHSPRRASEDSADDSFNVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTAEYAQLQREHKEKCSAHERLKREHASLERELVSARDAVRARDLAAEGAGFAFVDAAPAANGLNNNDAPAKPSLALVTHQNEKLLNDAGEGTLDVRLQKLLSSKTSLEGEVRRLKLQLSEEQHNGVARANDHDLETELEALRKSTAEAKARAVRAEAEAALQAAAAARLAAQLSRLRAQHDAQGEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_01134806;
- 80% Identity
- -