Ogra000568.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387264.1:7397112-7399898[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-08 1.5e-05 25.4 0.0 1 39 16 55 16 61 0.91 2 2 3.2 1.4e+03 -0.2 0.2 25 40 834 849 833 852 0.85
Sequence Information
- Coding Sequence
- ATGCCACGTAAATATACCCGGACCTCTTCACGGGCCACTTTTTATACAAAAGAAACGCTGCAATTAGCCATTCAAAAAATAAATAATAAGGAGCTCACCAATGCAGCCGCTTCAAAAATGTACGGCATTCCTACATCCACACTTAGTGATAGAATCCTACAGAAAACAGCAATTGTAAGTAATACCCTTGGCAGACCGACAGCTATCCCAGcggcattagaaatgaaactggcaaattgcctacgtacactggaaaaatggggttgggggttatcaagagaagaggtactcgatgttactcaagattttataaaaagaaatgaaataataacccccttcaataatgacagaccgggaccggactggtttatttcttttcgtgaacgccacaatttgtctattaaaaagccacaacctgtagaataccttagaaaaaaaataacagatccatttatcattcatgaatattttactcttcttaaaaagacactccacgagttaaatatttcagatcccaagcaaatctggaacctggatgaaacttcagtttgtctcgatcccacaaaaactaaagttgtaggtgccagaggggaaccttgtacacgcacaacgtgtggaagcgctaaagaaaatatcacagttttgactactgtaaatgcagccggacagaaattagaccccctgatcgtatttaagggtaaacacatgtatgaacagtggatgttacagaatcctgataaatacgatttcagtcttgcgtatgcagccagcaaacgaggctggatggaaacaaatattttttatgattacatatcaaaagtatttatacctaatttgggtgaagataggcctgtattattgctgtatgatagacatgtcagtcatgttgatgaaaaagtagtagctttagcaatagagaacaacattactatattgaagcttccagcacacacatcacatctattgcagccgctagacttggctgtgtttaaatcctttaaaacaatttgggacaaaaatcttgtaaaatggcaacgacaaaacgttggaaagaaattaagaaaacaaagttttgtccaaatgtttgctgaagcgtggaaggaaaccaaaccacaagtgataaaaaatgggtttaaaaaaggtggtatttacccttttaaTCCTGCGATTATACCAAAGAACAAATATGATCCAGCAGCTTATGCGCGATGGCAAAAGCACATGGCTCCAGTGACTTTCAAACAACAGAAAACTCTAGCACAGATATGTATAGATGAAATTAATAAGATCATGTCCTATAACAGCTCTACTTCTATCCCAAATAATAATATTGTTGACACTGAAATTTTGGACTTACCGACTTTAGAACGTAAAAACAGCCAACCACAACCACTCGCCAGTTTTGAACAAATACTTCTAGAGAAAGTTTCGCAACATCCTCAAAACTCCAAGAACAATATGGCTATTAAGTTAAAACGAGTCGCAAAAGGTGCAGAAGTGATAACGAAATCTTTACTTGAAAAACAGCAAGCGATAGAATTAACAAATAAAACACAAAAGACAACAAAACGGAAACCAAAAACAGTACTTCAATCTAAAAATTATGCAATTGATCCTATACCAGGACCATCTGGAATTCAAGATAAAGGCTTAAGATCAGAAGCAACCGTAAATCTATCAATTTTGACTAACAAGAATAACACTGACATGTATATTTCTAAAAAAGGCAAAGGAGTAGGAAAAAAATCTCGAACTGACAAAGAAAATGTTTTAAAAGTGTACACGCATGATGAGCATAGAAAGAAAAGTGTATTACATAAATTGGACAAAGAATCTGACCAAAAGACAAATACGAAGACAGTTATGAAAAAACGTAAAAGATCTAGTAGCAGTGTTACGACAATTGAAAGTGTTCAGATGAGCTTACACAGTGATTCTGACTTATTAGATTTTTTGAGCGACAATTTATCTCACTGTGATATATTGTCTGAGTTCAATTATGATGAGGAAAACAAGACTGACTTAGAATTAGCATCTAGAGAACAAGAAATTGAACAAATAGTTAAAGAAATATATGGCATGGATAATATTCAAGAGAAAATAGCAAGTTCAAGGGACGATAACTGCGAAGAGAGATGTGAGATAGACGAAATTCCAAAAATTCATACGATTAAGACAAACGTTAAGGCAAATGAAAATAATAAAGTGACTATCTTGTCGTCTGTGAAAATCACACCAGAAAACAAAGCTTTCTATAAAATTTTACCTGGAAGTTTACAACTAAAGCCAATTGATAAAGATTTAGATTTGTTTACAAACCAAAAGCGAAAACCGTCACAAAATTCAAGTGTATCTAATATACCAAAGAAAAGAATGAAGAAAGTTAATTGCCCTACAAAAACAACGACAAAAGATCAAAAGGATGTTAGTGGAAACTTTTATATCAACACTGATAAAGATGATGACGGTGAGACCAGAAATTACATCGATGATTTGAAGACATATAATATTGGGGATACAGTTCTCGTAAGATATTTTAAACGAACTTGGACATATTACGTCGGTATCATTGAAAATAATAATATCGATTCAAACCCAAATATGTATAAGATAACATTCTATAGAACTGTTGGCAAGAAAAATAACCTAAAATTTGTTATTACTAAGCGTAAAGATCAAGACCACGTACCTGATTCTAATATAGTTAAAGCGATAGAACTACTACAGATAAATGAAGACCCTGTTGAGTATACCCTTATGAATGACGATGATGAGATTTTTTTTTAA
- Protein Sequence
- MPRKYTRTSSRATFYTKETLQLAIQKINNKELTNAAASKMYGIPTSTLSDRILQKTAIVSNTLGRPTAIPAALEMKLANCLRTLEKWGWGLSREEVLDVTQDFIKRNEIITPFNNDRPGPDWFISFRERHNLSIKKPQPVEYLRKKITDPFIIHEYFTLLKKTLHELNISDPKQIWNLDETSVCLDPTKTKVVGARGEPCTRTTCGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWMLQNPDKYDFSLAYAASKRGWMETNIFYDYISKVFIPNLGEDRPVLLLYDRHVSHVDEKVVALAIENNITILKLPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGKKLRKQSFVQMFAEAWKETKPQVIKNGFKKGGIYPFNPAIIPKNKYDPAAYARWQKHMAPVTFKQQKTLAQICIDEINKIMSYNSSTSIPNNNIVDTEILDLPTLERKNSQPQPLASFEQILLEKVSQHPQNSKNNMAIKLKRVAKGAEVITKSLLEKQQAIELTNKTQKTTKRKPKTVLQSKNYAIDPIPGPSGIQDKGLRSEATVNLSILTNKNNTDMYISKKGKGVGKKSRTDKENVLKVYTHDEHRKKSVLHKLDKESDQKTNTKTVMKKRKRSSSSVTTIESVQMSLHSDSDLLDFLSDNLSHCDILSEFNYDEENKTDLELASREQEIEQIVKEIYGMDNIQEKIASSRDDNCEERCEIDEIPKIHTIKTNVKANENNKVTILSSVKITPENKAFYKILPGSLQLKPIDKDLDLFTNQKRKPSQNSSVSNIPKKRMKKVNCPTKTTTKDQKDVSGNFYINTDKDDDGETRNYIDDLKTYNIGDTVLVRYFKRTWTYYVGIIENNNIDSNPNMYKITFYRTVGKKNNLKFVITKRKDQDHVPDSNIVKAIELLQINEDPVEYTLMNDDDEIFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00711791; iTF_01085123; iTF_01285477; iTF_00432071; iTF_01425007; iTF_01425006; iTF_00001111; iTF_00001110; iTF_00001112; iTF_00114871; iTF_00952669; iTF_00038693; iTF_00667359;
- 90% Identity
- -
- 80% Identity
- -