Atri013225.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000053.1:1815254-1818028[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-09 1.5e-06 27.9 0.1 1 39 16 55 16 61 0.91 2 2 0.3 2.2e+02 1.8 0.1 23 40 828 845 828 848 0.87
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTCCCGGACGTCATTGCGGGCCACTTCCTATACAAAAGAAACGCTACAATTGGCCATACAGAAAATAAAAAACAAGGAGCTTACCTATGCAGCTGCCTCAAAACTGTACGGTATACCTACATCGACACTTAGTGATAGAATCCTAAAGAAAACAGCAATAGTAAGTAATACCCTTGGCAGGCCGACAGCTATCCCAGTAGCATTTGAATCTAAActggccaactgcctacgaacactggaaaagtggggttgggggttatcaagagaagaggtactcgatgtaactcaagattttataaaaagaaataaaataaaaacccccttcaatgatgacagaccaggaccggactggtttatttcttttcgtcaacgccacaatttatcaataaaaaaaccgcaacctgtagaataccttagaaaaaaaatgacagatccgtttataattcatgagtattttactcttctcgaaaaaacgcttcaagatttaaatatatcggatcccaagcaaatctggaaccttgacgaaacatcagtttgtctcgatcccacaaaaactaaagttgtaggtgccagagggcagccttgtacacgaacaacatgtggaagcgctaaagaaaatataacagttttgactactgtaaatgcagcgggtcagaaattggaccccctgatcgtatttaagggaaaacacatgtacgaacagtggatgttacagaatcctggaaaatacgatttcaatcttgcgtatgcagccagcaaacgaggctggatggaaactaatattttttatgattatatattaaaagtatttttacctaatttgggtgaaaacaggcccgttttattgctgtatgatggacatgtcagtcatatcgatgacaaagtggtagctttggcagtagaaaacaacatcactatattgaagcttcctgcacacacatcacatctattgcaaccgctagacttggctgtgtttaaatcgttcaaaacaatttgggataaaaacctcgtaaaatggcaacgacaaaacgttggaatgaaattaagaaaacaaagttttgctctgatgtttgctgaagcgtggcaggaaaccaaaccacaagtaataaaaaatggctttaaaaaaggtggcatttacccttttaaTCCTGCAATTATACCAAAGAACAAATATGATCCAGCAGCTTATGCGCGATGGCAAAAACACATGGCTCAAACTTTCAAAGAACCTAAAACTCTAGCACACCTATGTTTACATGAAATTAGTAAGATCATGTCCTGTAACGGCTCTACTTCTATCCCGAATAATAATATTGTTTACTCTGAAATTCAGGACTCACCGACTTTAGTACATAGTAACAGCCTGCTACAACCACTCGCCAGTTTCGAACAAATTCTTCTAGAAAAAGTTTCGCAACATCCTCAAAACTCTAAGAATAATATTGCGGTTAAGTTGAAACGAATTGCAAAAGGTGCAGAAGTGATAACAAAATCTTTTCTAGAAAAACAGCAAGCGATAGAATTAACAAAGGAAAAAGAAATACAGAAGGCATCAAAACGGAAACAAGAAACGGTACTTCAATCTAAAAATTGTGCATTTGATCCTATACCAGGGCCATCTGGAATTCAAGATAAAAATTTAAGAACAGAAGAAACCATAATGAATGTATCGATTTTGACTAACAAAAACAACACTAACGTGACTAAAAAAGGCAAAGGGAAAGGAGAGAAAACTCGAACTGACAAAGAAAATGATTTAAAAATGTACAAGTATGATGAACACAAGAAGAAAAGTGTATTACATAAATTAGATAATAAATCTAGCCAAAAGACAACAACGAGAAAGCGTAAAAGATCTAACAGTAGTGTAACGACAATTGAAAGCATTCAGATGAGCATCCATAGTGATTCTGATTTATTAGATTCTGTGAGCGACTTATTATCTAACTGTGATGAATTGACTGACTTTAATTATTATGAGAAAAACAAGACTGATTCAAAATTTGCATCTAGAGAACAACAAATTGAACAAATAGTTAAAGAAATACATGAAATGGATAATAATCAAGAAAAAAAAGCAAGCCAAAGGGGCGATACCTGCGAAGAAAGATGTGAGATAGAAGAAATTCCGGAAATTCATACGATTGAGACAAACGCTAGTGCAAATGATAATAATAAAGTGACTATCTTATCATCTGTAAAAATCACACCAGAAAACCAAGCTTTCTATAAAATTTTACCCAGAAGTTTACAACTAAAGACAATTGATAAAGATTTAGATTTGTTTACCAACCAAAAGAGAAAACTATCACAAAGTACAAGCGTATCAAATATACCAAAGAAAAGAACAAAGAAAGTTAATTGCCCTACAAAAATAACGACTAAAGATCAAAAGAATTTTAGTGGAGACTTGCATATCAACATTGATAAAGATGATAACGGTGGGACTAAAAATTATATTGATGATGCGAAGACATACAATATTGGAGATACAGTTCTCGTTAGATATTTCAAACGAACTTGGACATATTACGTTGGCATCATTGAAAATATGAGTATTAATTCAAACCCAAATATGTATAAGATAACATTCTATAAAACTATTGGAAAGAAAAACAAAATAAAATTTATTATTCCTAAGCGTAAAGATCAAGACTACGTACCTGATTCTAATATAGTTAAGGTGATAGAACTATTACAGATAAATGAAGATCCTGATGAGTATACCCTTATGAATGACGATGATGAGAATTTCTTTTAA
- Protein Sequence
- MPRKYSRTSLRATSYTKETLQLAIQKIKNKELTYAAASKLYGIPTSTLSDRILKKTAIVSNTLGRPTAIPVAFESKLANCLRTLEKWGWGLSREEVLDVTQDFIKRNKIKTPFNDDRPGPDWFISFRQRHNLSIKKPQPVEYLRKKMTDPFIIHEYFTLLEKTLQDLNISDPKQIWNLDETSVCLDPTKTKVVGARGQPCTRTTCGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWMLQNPGKYDFNLAYAASKRGWMETNIFYDYILKVFLPNLGENRPVLLLYDGHVSHIDDKVVALAVENNITILKLPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGMKLRKQSFALMFAEAWQETKPQVIKNGFKKGGIYPFNPAIIPKNKYDPAAYARWQKHMAQTFKEPKTLAHLCLHEISKIMSCNGSTSIPNNNIVYSEIQDSPTLVHSNSLLQPLASFEQILLEKVSQHPQNSKNNIAVKLKRIAKGAEVITKSFLEKQQAIELTKEKEIQKASKRKQETVLQSKNCAFDPIPGPSGIQDKNLRTEETIMNVSILTNKNNTNVTKKGKGKGEKTRTDKENDLKMYKYDEHKKKSVLHKLDNKSSQKTTTRKRKRSNSSVTTIESIQMSIHSDSDLLDSVSDLLSNCDELTDFNYYEKNKTDSKFASREQQIEQIVKEIHEMDNNQEKKASQRGDTCEERCEIEEIPEIHTIETNASANDNNKVTILSSVKITPENQAFYKILPRSLQLKTIDKDLDLFTNQKRKLSQSTSVSNIPKKRTKKVNCPTKITTKDQKNFSGDLHINIDKDDNGGTKNYIDDAKTYNIGDTVLVRYFKRTWTYYVGIIENMSINSNPNMYKITFYKTIGKKNKIKFIIPKRKDQDYVPDSNIVKVIELLQINEDPDEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118234;
- 90% Identity
- iTF_00001110; iTF_00001112;
- 80% Identity
- -