Alyc032426.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796868.1:2415298-2418066[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 7.7e-05 23.7 0.1 1 39 16 55 16 61 0.91 2 2 1.3 5.5e+02 1.8 0.2 23 40 826 843 826 846 0.87
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTCCCGAACCTCTTCGCGGGCCACTTCTTATACAAAAGAAGCGCTGCAATTAGCCatgcagaaaataaataataaggagCTCACCTATGCAGCCGCTTCAAAAATGTACGGCATACCTACATCCACACTTAGTGATAGAATCCTGAAGAAAACAGCGATAGTAAGTAATACCCTTGGCAGGCCGACAGCTATCCCAGTGGCATTAGAATCTGAACTGGCAAACTGTCTACGAACACTGGAAAAGTGGGGTTGGGGGTTATCAAGAGAAGAGGTACTCGATGTAACtcaagattttattaaaaaaaataaaataaaaacccccTTCAATGATGGCAGACCGGGACCGGACTGGTTTATTTCTTTTCGTCAACGCCACAATTTGTCAATAAAAAAGCCGCAACCTGTAGAATACCTCAGAAAAAAAATGACAGATCCGTTTATCATTCACGAATATTTTACTCTTCTCGAAAAGACGCTCCAGGGGTTAAATATTTCGGATCCCAAGCAAATCTGGAACCTCGATGAAACTTCAGTTTGTCTCGATCCTACAAAAACTAAAGTTGTAGGTGCCAGAGGGGAGCCTTGTACACGAACAACATGTGGAAGCGCTAAAGAAAATATCACAGTTTTGACTACTGTAAATGCAGCTGGACAGAAATTGGACCCCCTGATCGTTTTTAAGGGCAAACACATGTACGAACAGTGGATGTTACAGAATCCTGAAAAATACGATTTCAATCTTGCGTATGCAGCCAGCAAACGAGGCTGGATGGAAacgaatattttttatgattacatattaaaagtatttataccTAATTTGGGTGAAGACAGGCCCGTATTATTGTTGTATGATGGACATGTCAGTCATGTCGATGACAAAGTGGTATCTTTAGCAGTAGAGAACAATATCACTATATTGAAGCTTCCTGCACACACATCACATCTATTGCAACCGCTAGACTTGGCTGTGTTCAaatcttttaaaacaatttggGATAAAAACCTCGTAAAATGGCAAAGACAAAACGTTGGAATAAAATTGAGAAAGCAAAGTTTTGCTCAAATGTTTGCTGAAGCGTGGCAGGAAACCAAACCACAAGTAATAAGAAATGGCTTTAAAAAAGGTGGAATTTACCCTTTTAATCCTGCGATTataccaaaaaataaatatgatccAGCAGCTTATGCACGATGGCAAAAACACATGGCTCCGGTGACTTTTAAACAACCGAAAACTCTAACACAGATATGTGTAAATGAAATTAGTAAGATCATGTGTTATAACGGCTCTACttctacaaataataatattgataacTCTAAAATTTTAGACTCACCGACTTTAGAACATAGAAATAGTCTGCTACAACCGCTCGCCAGTTTCGAACAAATGCTTCTAGAAAAAGTTTCACAACACCCTCAAAACTCTAAGAACAATATAGCTGTTAAGTTAAAACGAGTCGCGAAAGGTGCAGAAGTGATTACAAAGTCTTTTCTAGAAAAACAGCAAGAGATAGAATTAACAAAGGAAAAAGAAATACGGAAGACACCAAAACGGAAACAAAAACTTCAATCTAAAAATGATGCATTTGATCCTATACCAGGACCATCTGGAATTCAAGATAAAAACTTAAGAACAGAAGCAACTGTAATGAATGTGTCGATTTTGactaataaaaacaacactGACGTGTGTATTTCTAAAAAAGGCAAAGGAGTAGGAAAAAAAACTAGAGCTGACaaagaaaatgatttaaaaGTGGACAAGTATGATGAACACAAGAAGAAAAGTGTAGTAAATAAATCAGGCCGAAAGAAAACTACAAAGACAGCTATGAAAAAGCGTAAAAGATCTAATAGCAGTGTAACGACAATTGAAAGTGTTCAGATGAGCGTACATAGTGATTCTGACTTATTAGATTCTTTTAGTGACATATTATCTGACTGCGATAAATTGACTGACTTTAATATATATGAGGAAAACAAGACTGACTTGGAATTAGCATCTAGGGAACAACAAATTGaacaaataattaaagaaaTACAGGACATGGATAATAATCAAGAGAAAAAAGCAAGCCAAAGGGATGATACCTGCGAAGAGAGATGTGACATAATTCCAGAAATTCATACGAAAGAGCCAAACGTTAAGgcaaatgataataataaagtgACTATCTTATCGTCTGTAAAAATCACACCAGAAAACCAAGCTTTCTATAAAATTTTACCCAGAAGTTTACAACTAAAGACAATTGATAAAGATTTAGATTTGTTTACAAACCAAAAGCGAAAACTGGCACATAGTACAAGCGTATCTAATAtaccaaagaaaaaaacaaagaaagttaattgccctacaaaaataaagacaaaagatcAAAAGGATTTAAGTGGAAACTTTTATATCAACATTGATAACGATGATGATGGTGAGACCAAAAATTATATTGATGATTCGAAGAAATACAGTATTGGGGATACAGTTCTTGTTAGATATTTCAAACGAACTTGGACATATTACGTCGGTatcattgaaaatattaatatcaATTCAAACCCAAATATGTACATGATAACATTCTATAGAAATGTTGGCAagaaaaacaacataaaatttGTTATTCCTAAGCGTAAAGATCAAGACTGCGTACCTGATTCTAATATAGTTAAGGTGATAGAACTACTACAGATAAATGAAGATCCTGTTGAGTATACCCTTATGAATGACGATgatgaaaatttcttttaa
- Protein Sequence
- MPRKYSRTSSRATSYTKEALQLAMQKINNKELTYAAASKMYGIPTSTLSDRILKKTAIVSNTLGRPTAIPVALESELANCLRTLEKWGWGLSREEVLDVTQDFIKKNKIKTPFNDGRPGPDWFISFRQRHNLSIKKPQPVEYLRKKMTDPFIIHEYFTLLEKTLQGLNISDPKQIWNLDETSVCLDPTKTKVVGARGEPCTRTTCGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWMLQNPEKYDFNLAYAASKRGWMETNIFYDYILKVFIPNLGEDRPVLLLYDGHVSHVDDKVVSLAVENNITILKLPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGIKLRKQSFAQMFAEAWQETKPQVIRNGFKKGGIYPFNPAIIPKNKYDPAAYARWQKHMAPVTFKQPKTLTQICVNEISKIMCYNGSTSTNNNIDNSKILDSPTLEHRNSLLQPLASFEQMLLEKVSQHPQNSKNNIAVKLKRVAKGAEVITKSFLEKQQEIELTKEKEIRKTPKRKQKLQSKNDAFDPIPGPSGIQDKNLRTEATVMNVSILTNKNNTDVCISKKGKGVGKKTRADKENDLKVDKYDEHKKKSVVNKSGRKKTTKTAMKKRKRSNSSVTTIESVQMSVHSDSDLLDSFSDILSDCDKLTDFNIYEENKTDLELASREQQIEQIIKEIQDMDNNQEKKASQRDDTCEERCDIIPEIHTKEPNVKANDNNKVTILSSVKITPENQAFYKILPRSLQLKTIDKDLDLFTNQKRKLAHSTSVSNIPKKKTKKVNCPTKIKTKDQKDLSGNFYINIDNDDDGETKNYIDDSKKYSIGDTVLVRYFKRTWTYYVGIIENININSNPNMYMITFYRNVGKKNNIKFVIPKRKDQDCVPDSNIVKVIELLQINEDPVEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118234;
- 90% Identity
- iTF_01085123;
- 80% Identity
- -