Pumb002000.2
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982917.1:4110046-4112811[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-09 3.8e-06 27.4 0.1 1 39 16 55 16 61 0.91 2 2 0.63 8.3e+02 0.7 0.2 24 40 826 842 825 845 0.85
Sequence Information
- Coding Sequence
- ATGCCACGTAACTACTCCCGAACCTCTTCGCGTGCCACTTCCTATACAAAAGAAGCACTGCAATTAGCcatacagaaaataaataataaggagCTCACCTATGCAGCCGCTTCAAAAATGTACGGCATACCTACATCCACACTTAGTGATAGAATCCTGAAGAAAACAGCAATAGTAAGTAATACCCTTGGTAGGCCGACAGCTATCCCAGTGGCATTAGAATCTAAACTGGCAGACTGCCTACGAACATTAGAAAAGTGGGGTTGGGGATTATCAAGAGAAGAGGTACTCGATGTAACTcaagattttataaaaagaaataaaataaaaacacccttCCATGATGACAGACCGGGCCCGgactggtttatttattttcgacaACGCCACAATTTGTCAATAAAAAAGCCGCAACCGGTAGAAtaccttagaaaaaaaatgacagatcCGTTTATCATTCACGAATATTTTACTCTTCTTGAAAAGACGCTCcacgaattaaaaatttcaaagcCCGAGCAAATCTGGAACCTCGACGAGACTTCAGTTTGTCTTGATCCTacaaaaacaaaagttgtaggtgcCAGAGGGGAGCCTTGTACACGAACAACATGTGGAAGTGCTAAAGAAAACATCACAGTTTTGACTACTGTAAATGCTGCCGGACAGAAATTGGACCCCCTGATCGTATTTAAGGGCAAACACATGTACGAACAGTGGATGTTACAGAATCCCGAAATGTACAATTTCGATCTTGCGTATGCAGCCAGCAAACGAGGCTGGatggaaacaaatattttttatgattatatatttaaagtatttatacCCAATTTGGGAGAAGAAAGGCCCGTATTATTGGTGTATGATGGACATGTCAGTCATGTCGATGACAAAGTGGTAGCTTTAGCAGTAGAGAATAACATCACCATATTGAAGCTTCCTGCACACACATCACATCTCTTACAACCACTAGATTTGGCTGTATTCAAatcttttaaaacaatttgGGATAAAAACCTCGTAAAATGGCAAAGACAAAACATTGGAATGAAATTGAGAAAACAAAGTTTTGCTCAGATGTTTGCTGAAGCGTGGCAGGAAACCAAACCACAAGTTATCCAAAATGGGTTTAAAAAAGGTGGCATTTATCCTTTTAATCCTGCGattataccaaaaaataaatatgatccAGCAGCTTATGCGCGATGGCAAAAGCACATGGCTCCAGTGAATTTTAAACTGCCGAAAACTCTCATACAGATATGTGTAGATGAAATTAGTAAGATCATGTCCTATAGCGGCTCTACTTCTAtcccaaataataatattgttaactcTGACATTTTAGACCCGCCGACTTTAGAACATAGTAATAGCCTGCTACAACCACTCGCCAGTTTCGAACAGATACTTCTAGAAAAAGTTTCGCAACATCCTCAAAACTCGAAAAACAATATAGCTGTTAAGTTAAAACGAGTCGCAAAAGGTGCAGAGGTGATAACAAAATCTTTTCTAGAAAAACAGCAAGCGATAGAATTAACAAAGGAAAAAGAAATACAGAAGACAACAAAACGGAAACAAAAAACAGTACTACAATCTAAAAAGAATGCATTTGATCCTATACCAGGACCATCTGGAActcaacaaaaaaacttaagaaCAGAAGCAACCGTAACGAATGTATCGATtttgactaataaaaataacactgaCGTATATCTTTCTAAAAAAGGCAAAGGAGTAGGAAAAAGATCTCGAACTGACAAAGAAAATGATTTGAAAGTGGACAAGTATGATGAACACAGGAAGAAAACTGTATTATATAAATTGGATAATAAATCTGGCCAAACGACAACTACAAAGACAGCTATGAAAAAGCGCAAAAGATCTAATAGCAGTGTAACAACAGTTGAAAGTATCCAGATGAGCGTACATAGTGATTCTGACTTATTAGATTCTTTGAGCGACATATTATCCGACTGTGATAAATtgactgattttaattattatgaggAAAAAAAGACTGACTTAGAAGCTACATCTAGAGaacaacaaattgaaaaaattgttaaagaaaTACATGACATGGATaataatcaaaagaaaaaagcAAGCCAAAGAGACGATACTTGCAAAGATAGATGTGAAATAGAAGAAATTCCAGAAATTCAAACGATAGAGACAAACATAAAagcaaatgataataataaagtgACTATCTTATCGTCTGTAAAAATCACACCAGAAAACCAAGCTTTCTATAGAATTTTACCCGAAAGTTTACAACTAAAACCAATTGATAAAGATTTAGATTTGTTTACAAACCAAAAGCGAAAACTGACACAAAGTACAAGCGTATCTAACATACCAAAGAAAAGAACTAAGAAAGCTAATTGCCCTACAAAAACAACGATAAAATATCAAAAGGATAAAGATGATGATGGTGGGGTAAAAAGTGATATTGATGATTCAAAGACTTACAATATTGGAGATACAGTTCTCGTTAGATATTTCAAACGAACTTGGACATATTATGTCGGtatcattgaaaatattaatatcaactCAAACCCAAATATGTATAAGATAACATTCTATAGAACTATTGGCAAGAAAAACAACCTAAAATTTGTTATTCCTAAGCGTAAAGATCAAGACTACGTACCTGATTCTAATATAGTTAAGATGATAGAACTACTACAGATAAATGAATATCCTTTTGAGTATACCCTTATGAATGACGATGATgagaatttcttttaa
- Protein Sequence
- MPRNYSRTSSRATSYTKEALQLAIQKINNKELTYAAASKMYGIPTSTLSDRILKKTAIVSNTLGRPTAIPVALESKLADCLRTLEKWGWGLSREEVLDVTQDFIKRNKIKTPFHDDRPGPDWFIYFRQRHNLSIKKPQPVEYLRKKMTDPFIIHEYFTLLEKTLHELKISKPEQIWNLDETSVCLDPTKTKVVGARGEPCTRTTCGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWMLQNPEMYNFDLAYAASKRGWMETNIFYDYIFKVFIPNLGEERPVLLVYDGHVSHVDDKVVALAVENNITILKLPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNIGMKLRKQSFAQMFAEAWQETKPQVIQNGFKKGGIYPFNPAIIPKNKYDPAAYARWQKHMAPVNFKLPKTLIQICVDEISKIMSYSGSTSIPNNNIVNSDILDPPTLEHSNSLLQPLASFEQILLEKVSQHPQNSKNNIAVKLKRVAKGAEVITKSFLEKQQAIELTKEKEIQKTTKRKQKTVLQSKKNAFDPIPGPSGTQQKNLRTEATVTNVSILTNKNNTDVYLSKKGKGVGKRSRTDKENDLKVDKYDEHRKKTVLYKLDNKSGQTTTTKTAMKKRKRSNSSVTTVESIQMSVHSDSDLLDSLSDILSDCDKLTDFNYYEEKKTDLEATSREQQIEKIVKEIHDMDNNQKKKASQRDDTCKDRCEIEEIPEIQTIETNIKANDNNKVTILSSVKITPENQAFYRILPESLQLKPIDKDLDLFTNQKRKLTQSTSVSNIPKKRTKKANCPTKTTIKYQKDKDDDGGVKSDIDDSKTYNIGDTVLVRYFKRTWTYYVGIIENININSNPNMYKITFYRTIGKKNNLKFVIPKRKDQDYVPDSNIVKMIELLQINEYPFEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118234;
- 90% Identity
- -
- 80% Identity
- -