Tmat013901.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419179.1:14766110-14768842[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-07 0.00015 21.8 0.0 1 39 16 55 16 61 0.91 2 2 2.4 1e+03 -0.1 0.2 25 40 816 831 815 834 0.85
Sequence Information
- Coding Sequence
- ATGCCACGTAAATATACCAGAACCTCTTCGCGGGCCACTTCTTATACTAAAGAAGCGCTGCAATTAGCCATGCAGAGAATAAATAATAAGGAGCTCACTTATTTAGCTGCTTCAAAATTGTATGGTATTCCTACATCCACACTAAGTGATAGAATCCTAAAGAAAACAGCAATAGTAAGTAATACCCTCGGCAGGCCAACAGCTATCCCAGCGGCATTagaaactaaactggcaaattgcttacgaacactggaaaagtggggttgggggttatcaagagaagaggtactcgatgttactcaagattttataaaaagaaatgaaataaaaacccccttcaataatgacagaccgggaccggactggtttatttcttttcgccaacgccataatttgtcaattaaaaagccacaacctgtagaataccttagaaaaaaaatgacagatcctttcatcattcatgaatattttactcttctcgaaaagacgctccgcgagttaaatatttcggatcccaagaaaatctggaacctggatgaaacttcagtttgtctcgatcccacaaaaactaaagttgtaggtgccagaggggaaccttgtacacgaacaacgtgtggaagcgctaaggaaaatatcacagttttgactactgtaaatgcagccggacagaaattagaccccctgatcgtatttaagggcaaacacatgtacgaacagtggatgttacagaatcctgaaaaatacgatttcaaccttgcgtatgcagccagcaaacgaggctggatggaaactagtattttttatgattatatatcaaaagtatttatacctaatttaagtgaagacaggcctgtattattgctgtatgatggacatgttagtcatgtcgatgacaaagtagtagctttagctatagagaacaatattactatactgaagcttcctgcacacacatcacatctattgcaaccgctagacttggctgtgtttaaatctttcaaaacaatttgggataaaaatctcgtaaaatggcaacgacaaaacgttggattgaaattaagaaaacaaagttttgctcaaatgtttgctgaagcgtggcaggaaacgaaaccacaagtcataaaaaatggctttaaaaaaggtggcatttacccttttaaCCCTGCAATTATACCAAAGGACAAATATGACCCAGCAGCTTATGCGCGATGGCAAAAACACATGGCTTCAGTGACTTTCAAAAAACAGAAAACTTTAGCACAGATATGTATAGATGAAATTAATAAGATCATGTCCTATAACAGCTCTACAAAACTACTCGCCAGTTTCGAACAAATACTTCTAGAAAAAGTTTCGCAACATCCTCAAAACTCCAAGAACAATATGGCTATTAAGTTAAAACGAGTCGCAAAAGGTGCAGAAGTGATAACAAAATCTTTTCTAGAAAAACAGCATGCGATAGAATTAACAAATGAAATACAAAAAACAACAAAACGGAAACAAAGAACAGTACTTCAATCAAAAAATTATGCATTTGATCCTATACCAGGACCATCTGGAATTCAAGATAAAGGCTTAAGATCAGAAGCAACCGTAAATGTATCGATTTTAACTAACAAGAACAACACTGACATGTATATTTCTAAAAAAGGCAAAGGAGTTGGAAAAAAAACGCGAACTGACAAAGAAAATGATTTAAAAGTGTACAAGCATGATAAAAACAGAAAGAAAAGTGTGTTACATAAATTGGATAATGAATCTGGCCTAAAGACAACTACGAAGACAGCTATGAAAAAACGTAAAAGATCTAATAGCAGTGTTACGACAATTGAAAGTGTTCAGATGAGCGTACACAGTGATTCTGACTTATTAGATTTTTTGAGCGACAATTTATCTAACTGTGATAAATTATCTGACTTTAATTATTATGAGGAAAATATGACTGACTTAGAATTAAGAGAACAACAAATTGAACAAATAGTTAAAGAAATACATGACATGGATAATATTCAAGAGAGAATAGCTAGTCCAAAGGACGATAACTGCGAAGAGTCATGCGAGATAGAAGAAATTCCAGAAATTCATATGAATAAGACAAACGTTACGGCAAATGATAATAACAAAGTGACTATCTTGTCGTCTGTGAAAAGCACACCAGATAATAAAGCTTTCTATAAAATTTTACCAGAAAGTTTACAATTAAAGCCAAATGATAAAGATTTACAATTAAAGCCAAATGATAAAGATTTCGATTTGTTTACAAATCAAAAGCGGAAGCGATCACAAAGTACAAGCGTATGCAATATACCAAAGAAAAGAACGAAGAAAGTTAATTGCCCTACAAAAACAACGACAAAAGATCAAAATTATTTCAGTGGAAACTTTTATATCAACACTGATAAAGATGATGACGGTGGGACCAAAAATTATATTGATGATTTGAAGACGTACAATATTGGGGATACAGTTCTCGTTAGATATTTTAAACGAACTTGGACATATTACGTCGGTATCATTGAAAATAATAATATCAACTCAAACCCAAATATGTACCAGATAACATTCTATAAAACTGTTGGCAAGAAAAACAACCTAAAATTTGTTATTCCTAAGCGTAAAGATCAAGACTATGTACCTGATTCTAATATAGTTAAAGTGATAGAACTACTACAGATAAATGAAGACCCTGTTGAGTATACCCTTATGAATGACGATGATGAGAATTTCTTTTAA
- Protein Sequence
- MPRKYTRTSSRATSYTKEALQLAMQRINNKELTYLAASKLYGIPTSTLSDRILKKTAIVSNTLGRPTAIPAALETKLANCLRTLEKWGWGLSREEVLDVTQDFIKRNEIKTPFNNDRPGPDWFISFRQRHNLSIKKPQPVEYLRKKMTDPFIIHEYFTLLEKTLRELNISDPKKIWNLDETSVCLDPTKTKVVGARGEPCTRTTCGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWMLQNPEKYDFNLAYAASKRGWMETSIFYDYISKVFIPNLSEDRPVLLLYDGHVSHVDDKVVALAIENNITILKLPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGLKLRKQSFAQMFAEAWQETKPQVIKNGFKKGGIYPFNPAIIPKDKYDPAAYARWQKHMASVTFKKQKTLAQICIDEINKIMSYNSSTKLLASFEQILLEKVSQHPQNSKNNMAIKLKRVAKGAEVITKSFLEKQHAIELTNEIQKTTKRKQRTVLQSKNYAFDPIPGPSGIQDKGLRSEATVNVSILTNKNNTDMYISKKGKGVGKKTRTDKENDLKVYKHDKNRKKSVLHKLDNESGLKTTTKTAMKKRKRSNSSVTTIESVQMSVHSDSDLLDFLSDNLSNCDKLSDFNYYEENMTDLELREQQIEQIVKEIHDMDNIQERIASPKDDNCEESCEIEEIPEIHMNKTNVTANDNNKVTILSSVKSTPDNKAFYKILPESLQLKPNDKDLQLKPNDKDFDLFTNQKRKRSQSTSVCNIPKKRTKKVNCPTKTTTKDQNYFSGNFYINTDKDDDGGTKNYIDDLKTYNIGDTVLVRYFKRTWTYYVGIIENNNINSNPNMYQITFYKTVGKKNNLKFVIPKRKDQDYVPDSNIVKVIELLQINEDPVEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118234;
- 90% Identity
- iTF_01425007;
- 80% Identity
- -