Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725340.1:3327292-3337893[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.054 9.1 8.4 2.3 2 23 155 176 154 176 0.96

2 16 1.9e-05 0.0033 19.3 4.5 1 23 181 203 181 203 0.98

3 16 0.00087 0.15 14.1 4.1 1 23 209 231 209 231 0.97

4 16 0.0094 1.6 10.8 2.1 1 19 237 255 237 256 0.96

5 16 2.3e-06 0.00039 22.2 0.2 1 23 265 287 265 287 0.98

6 16 0.0086 1.5 10.9 0.7 1 23 533 556 533 556 0.96

7 16 7.6e-05 0.013 17.4 5.4 1 23 562 584 562 584 0.98

8 16 4.2e-06 0.00071 21.4 5.1 1 23 590 612 590 612 0.98

9 16 1.6e-05 0.0027 19.5 2.2 1 23 618 641 618 641 0.94

10 16 0.0096 1.6 10.8 1.2 1 23 655 677 655 677 0.87

11 16 0.00014 0.023 16.6 4.3 1 23 683 705 683 705 0.98

12 16 2.2e-06 0.00037 22.2 0.5 1 23 712 734 712 734 0.96

13 16 2.8e-06 0.00047 21.9 1.2 1 23 740 762 740 762 0.98

14 16 4.1e-07 7e-05 24.5 0.9 3 23 770 790 768 790 0.96

15 16 2e-05 0.0034 19.2 0.1 1 23 796 818 796 818 0.99

16 16 0.056 9.5 8.4 0.7 1 23 823 846 823 846 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.054	9.1	8.4	2.3	2	23	155	176	154	176	0.96
2	16	1.9e-05	0.0033	19.3	4.5	1	23	181	203	181	203	0.98
3	16	0.00087	0.15	14.1	4.1	1	23	209	231	209	231	0.97
4	16	0.0094	1.6	10.8	2.1	1	19	237	255	237	256	0.96
5	16	2.3e-06	0.00039	22.2	0.2	1	23	265	287	265	287	0.98
6	16	0.0086	1.5	10.9	0.7	1	23	533	556	533	556	0.96
7	16	7.6e-05	0.013	17.4	5.4	1	23	562	584	562	584	0.98
8	16	4.2e-06	0.00071	21.4	5.1	1	23	590	612	590	612	0.98
9	16	1.6e-05	0.0027	19.5	2.2	1	23	618	641	618	641	0.94
10	16	0.0096	1.6	10.8	1.2	1	23	655	677	655	677	0.87
11	16	0.00014	0.023	16.6	4.3	1	23	683	705	683	705	0.98
12	16	2.2e-06	0.00037	22.2	0.5	1	23	712	734	712	734	0.96
13	16	2.8e-06	0.00047	21.9	1.2	1	23	740	762	740	762	0.98
14	16	4.1e-07	7e-05	24.5	0.9	3	23	770	790	768	790	0.96
15	16	2e-05	0.0034	19.2	0.1	1	23	796	818	796	818	0.99
16	16	0.056	9.5	8.4	0.7	1	23	823	846	823	846	0.97

Sequence Information

Coding Sequence: atggaaatagaaCAGGTGAATCTTGGTCGGATTTGCCGGACATGCAAATGCGTTAGCCCTCATATGCGATCCTTATTTGAGGGTTTCGAAAATCCTCATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTGATCTGTGGAGACGGTTTGCCGACTTTAATGTGCCAAATATGTGTGGAACAGCTGAAAAATGCTTATCTTTTCAAAAGACAAGCAGAAAAGGTCGATATGGGTTTAAGAGAGtacgcaaaaaatctcaaagtaaatgaaattaaacaagAATTGCAGAATTCAGAGTTTATGGaGTCTCTTCATACTCTTGACAGCATCCTAAATGAACAAACAACAACAAAAGAAACCGTCAGCACTGGAGAAGTTGTACCTCCACCACCTAAGTTCGAAACTGATTATATTCAATTTATGGACAACAACCAAATGTTACTTACATGTCGTGAATGTGCTAAAATGTTTACAACTTTGGagGGTCTTCGATGCCATAAACGTATTCATACTGGTGGTATGTACAAATGCAAACAATGTGACAAGGAATATACCAGACTAAACCATCTACAAAGACATGAACAGTCTCATAACAGAAGAAAGGTACATGTGTGCAGAATATGCAGTAAAACTTTGACCAGGATGGAGCATCTAAAACGTCACTTAGTCACTCATCTTAGGGAAAAACCCTTTTCATGTAAAACATGTAATAGGGGCTTCAATCGCATTGAACATTTACACAATCATGCTCCTAGATGCAAAGgtgATACTGTATATCCTTGTGATATTTGCAACAAGGCATTCAATCGTGAAGACAGTCTTGAAGTACACAAAAAAATGCATGATAACCAAGCTCCAAAATTgccaactattgaaaatttggaTAATATCGAGGATCACTATTATCAAATAGATCAGGATAACACTACTGTTGATTTTTCTGATCATTCTGATGTTGACGATTGTTTCGAACCCCAAGTTGAGGTCACAGAGACTGAAGATGATAAACTTAAGGTTGTTGCTGAAATTTCGAATCAAGATCAAGATCCAGAAGAAGAAAGCATTCACAGTGATGTTGACGGTGATAATGATGATATTGGTTCGGTGGGTGGTGGAGATATGGATAATGATGTAGATATTGATAGTGAGATTGATGATATTGATAAGGATCACGAAGATAATGAAGATAGTTCTGAGGAGAGAGAAAATAAACAGATGCCACTAGGACATGAAATGACTGAAGATGATAAACCAAATGTTAAACTAGAAGCATCAAAAATACTAGATGATGAGGATGAATATATGAAAGATGTTATTGCTGAAACTGAAGTAGATGatgATGAATCAGATAAAGATAGTGGAGATTCGGATTACACTCCCAAAAAGACCATTGTTAAAGTAAAACGTGGTAGAGGTAGACCTCGGAAAAATCCAGATGATCCTCCCAAACTGAAAATGATGAAATCTTCTAAAATACCAGGAAAGAGAGGTCGTAAACCTGGTTCCAAGAATAAAGTTAAAAGAGAGCCTGGAGAATACTCAATGAAAATAGAAAGAGAGGATGAAGAATATGGTGAATTCCCATGTCCAATTTGTAACGAAATGTTCCATTCTATACTTAAGTTGGATAAACATGCAAGGATGAAACATGAAGAAGCAAAGATTCACAAATGTAATGTCTGCAGTAAAGAATTTTCTCGAATTAATCACCTAAAGAGACACATTACATCCCATTCAACTATCAAACCCTTCCGTTGTACTGTATGTACGAAGAGCTTTAACAGACGCGACCATCTTAATCAGCATCAGAAATTGCACGACAGACAGAATGATCATGAATGTGACATATGTCAAAAACCATTCACTAGAGCTGATCACCTCGCAAAACACAAGGCCTCGAAACACGGCATAGGAGAGCGAATTTCTatGATTGGGGAAAAGAAGTACGAATGTCCGTTATGCCACAAATTTTTCACCACGGAAAAATACAGGGACGTTCATGTAGCCGGTCACAATGGTACTAAGGAATATTCCTGTAAAGTGTGCGAGAAAACTTTCCTATCAAAATCACATTTGACAGAACATATGAAATTCCATAATGAACATTCCAAGAAGTTTCTCTGTTCTGAATGTGGGCAGAGATTTATTAGAAATGACTATTTGGTTATACATATGAGAAGACATAGAGGTGAAAAGCCATTCAAATGCAAATATTGTGGAAAAgGTTTCCCTAGAACGACAGATCTTACAGTTCACGAAAGATATCACACTGGAGAAAAAACCCATTTATGTACAATATGTGGTAGAGGTTTTGGAAGggCGTACAATTTAACAGTTCATATGAGAACTCACACTGGCGAAAAACCGTACCAGTGTACATATTGTGATGCCGCTTTTGCTCAAGGCAACGATCTGAAAGCCCATGTTAGAAGACACACTGGAGAACGGTTTCAATGTGAATTGTGTACTGAAAGTTTCCTTATGGGCTACCTATTAACACAGCACAAACGTACAGTTCACGggTTGAATGTTGTTAGTAACATTAGAAGGTTGCAACCAGTCCATAAGCAGGAGAATCCAGATGAACCACCTCCGATTACAATACCGCTTCCGAAACCAGTCATTCCGGACAACGTTATGTTCAATGCCTTACATGCAAATGCGCTGCACGCTAATGCTCTTCATGCGAATGCTTTACATGCTAATGCACTTCATGCGCAGTTGGCCGTAGCGCAGCTTCATTTAGCTAGAGAATAA
Protein Sequence: MEIEQVNLGRICRTCKCVSPHMRSLFEGFENPHQSPRIDEMLMACASVQVICGDGLPTLMCQICVEQLKNAYLFKRQAEKVDMGLREYAKNLKVNEIKQELQNSEFMESLHTLDSILNEQTTTKETVSTGEVVPPPPKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHKKMHDNQAPKLPTIENLDNIEDHYYQIDQDNTTVDFSDHSDVDDCFEPQVEVTETEDDKLKVVAEISNQDQDPEEESIHSDVDGDNDDIGSVGGGDMDNDVDIDSEIDDIDKDHEDNEDSSEERENKQMPLGHEMTEDDKPNVKLEASKILDDEDEYMKDVIAETEVDDDESDKDSGDSDYTPKKTIVKVKRGRGRPRKNPDDPPKLKMMKSSKIPGKRGRKPGSKNKVKREPGEYSMKIEREDEEYGEFPCPICNEMFHSILKLDKHARMKHEEAKIHKCNVCSKEFSRINHLKRHITSHSTIKPFRCTVCTKSFNRRDHLNQHQKLHDRQNDHECDICQKPFTRADHLAKHKASKHGIGERISMIGEKKYECPLCHKFFTTEKYRDVHVAGHNGTKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPDNVMFNALHANALHANALHANALHANALHAQLAVAQLHLARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00387439; iTF_00459152; iTF_00792380; iTF_00026267; iTF_01106595; iTF_00736017; iTF_00911294;
90% Identity: iTF_00792380;
80% Identity: -