Ocom074634.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ophraella communa
Gene Symbol
-
Assembly
GCA_035357415.1
Location
CM068992.1:29415517-29439957[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.048 17 8.4 2.3 2 23 151 172 150 172 0.96
2 16 1.7e-05 0.0062 19.3 4.5 1 23 177 199 177 199 0.98
3 16 0.00077 0.28 14.1 4.1 1 23 205 227 205 227 0.97
4 16 0.0083 3 10.8 2.1 1 19 233 251 233 252 0.96
5 16 1.1e-06 0.00039 23.1 0.2 1 23 261 283 261 283 0.98
6 16 0.0001 0.037 16.8 0.2 1 23 519 542 519 542 0.96
7 16 2.9e-05 0.011 18.6 5.0 1 23 548 570 548 570 0.98
8 16 8.4e-06 0.003 20.3 4.2 1 23 576 598 576 598 0.98
9 16 2.3e-05 0.0083 18.9 1.5 1 23 604 627 604 627 0.95
10 16 0.011 3.9 10.5 1.4 1 23 641 663 641 663 0.86
11 16 0.00012 0.044 16.6 4.3 1 23 669 691 669 691 0.98
12 16 1.9e-06 0.0007 22.3 0.5 1 23 698 720 698 720 0.96
13 16 2.5e-06 0.0009 21.9 1.2 1 23 726 748 726 748 0.98
14 16 3.6e-07 0.00013 24.5 0.9 3 23 756 776 754 776 0.96
15 16 1.8e-05 0.0065 19.2 0.1 1 23 782 804 782 804 0.99
16 16 0.05 18 8.4 0.7 1 23 809 832 809 832 0.97

Sequence Information

Coding Sequence
ATGGAAAACGTAAATCTCAATCTTATTTGCAGAACTTGTAAATGTGTTAGTCCGCATATGCGGTCGCTCTTCGAGGGATATGAAAATCCTCATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTGATATGTGGGGACGGTTTACCGAATTtaatatgtcaaatatgtgtAGATCAACTGAAAAATGCTTTTCTTTTCAAAAAACAAGCGGAAAAAGTAGATATCGGTTTAAGAGAGTACGCAAAAAATCTGAAAGTAAACGAAATTAAACAAGAACTGCAAAATTCGGAATTTATGGaatCTCTACAAACTCTTGACAGTATATTGAATGAACCAGCAGCTAAAGATGTATCAGTTACTGGAGAAACAGCTCCACCTCAAAAATTTGAAACAGATTATATACAATTTATGGACAACAATCAGATGCTTCTTACATGTAGGGAATGTGCCAAAATGTTCACTACTTTGGAAGGTCTACGATGTCACAAACGTATTCACACAGGAGGAATGTACAAATGTAAACAGTGTGATAAAGAATATACTAGACTTAATCACCTACAACGCCATGAACAATCACATAACAGAAGGAAGGTCCATGTTTGTAGAATTTGCAGCAAAACTTTAACAAGAATGGAACATTTAAAACGTCATTTGGTTACACATTTAAGAGAGAAACCATTTTCATGTAAAACTTGTAATAGAGGTTTTAATAGGATTGAACATTTACACAATCATGCACCTAGAtgtaaagggGACACTGTTTATCCAtgtgatatttgtaataaaGCATTTAATCGTGAAGATAGCCTTGAGGTTCATAGAAAAATGCACGATTCTACCACTCCAAAGTTGCCTACCATTGAAAATCTTGACAATATTGAAGATCATTATTATCAGATAGATCAAGACCCTTCTGCCGATTTTTCTGATCATTCTGATGTGGATGATTGTTTTGAACCACAAGTGGAGGTTACTGAAACAACAGAAGATAgtaaagaaaaaGTTGCTGCTGAAATTTCTAATCATGAAGAAACAATTGAAGACGAAAATGTTCATAGTGATGGATCGGTTGGTGGTGGAGATATTGGAAATGATATAGATAATGATAGTGATGAGGATGAGGAATTTGATGAAGGGAAGGACGTTGAGAGTGGCGAAGAAAGAGATAGTAAAGAGCTAACTGGAATCGATGACGAATCAGGAGAACACAAGAATGTCAAAATTGAAGAAGAGAAACCATCAATTGATGATGAAGAGTACATTAAAAATGTCATTGCTGCTGCTGAAAgatCAGATGATGATGACGATTCTGACAAAGAAAGTAACGATTCTGATTATGTGCCTCAAAAGAAAGCATCTCCACCTGTGAAACGTGGTCGAGGCAGACCACGTAAAAGTCTCGATTCGCCGCCAAAATCTATTAAGAAAACAGAAGGAGGCGCCAGAAGAGGTCGTAAACCAGgttcaaagaataaaaaaacgTTAATGCGGGAAAGAGATATGATAATAAAAGAGGAAGAAGATGATTATGGAGATTATCCGTGTCCTGTTTGTAATGAAATGTTTAATACTATGAGTAAATTGGACCGGCATGCCAAAATTAGACATGAAGGAGCTAAGATACACAAATGTAACGTATGCAGTAAAGCATTCTCTAGAATCAATCATCTAAAGAGACACATCACGTCCCACTCAACTATCAAACCGTTCCGTTGTACTGCATGTCCCAAGAGCTTTAACAGACGCGATCATCTTAAACAACATCAAAAGTTGCACGAAAGGACCAACGATTACGAATGCGAGGTATGTCAGAAACAGTTCAATCGAGCTGATCACCTTGCTAAACATAAGGCATCTAAACACGGCATAGGAGAAAGAATATGTGTAATGGGTGAGAAAAAATACGAATGTCCTTTGTGTCACAAATTCTTTACTACGGAAAAATACAAAGATGTACACGTTGCCGGTCACAATGGTACTAAAGAATATTCCTGCAAAGTATGTGAAAAAACGTTCTTGTCGAAATCTCATTTGACGGAACACATGAAATTCCACAATGAACATTCCAAGAAGTTCCTCTGTTCGGAATGCGGACAAAGATTTATTAGAAACGATTATTTAGTTATACATATGAGACGACATAGAGgagaaaaaccattcaaatgcaaGTATTGTGGAAAAGgcTTCCCCAGAACCACCGATTTGACTGTTCACGAAAGATATCATACTGGTGAAAAAACTCATTTATGCACAATCTGTGGAAGAGGATTCGGaagAGCGTACAATCTTACCGTTCATATGAGGACACATACTGGTGAAAAACCTTACCAATGTACGTATTGCGATGCTGCGTTTGCTCAAGGTAATGATTTGAAGGCTCACGTAAGACGACATACAGGAGAGAGATTTCAATGTGAATTATGTACTGAAAGTTTCCTTATGGGTTATTTATTGACACAACACAAGAGAACTGTGCATGGACTGAATGTTGTAAGCAACATAAGACGACTGCAACCCgttcataaacaagaaaatccagATGAGCCACCACCAATAACAATTCCTTTACCAAAACCCGTAATTCCGGACAATGTTATGTTCAATGCCTTACACGCGAATGCCCTACATGCTAACGCTCTTCATGCCAATGCTCTACATGCTAACGCTCTCCATGCGCAACTGGCAGTTGCGCAACTACATCATTTAGCTCGGGAATAA
Protein Sequence
MENVNLNLICRTCKCVSPHMRSLFEGYENPHQSPRIDEMLMACASVQVICGDGLPNLICQICVDQLKNAFLFKKQAEKVDIGLREYAKNLKVNEIKQELQNSEFMESLQTLDSILNEPAAKDVSVTGETAPPQKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHRKMHDSTTPKLPTIENLDNIEDHYYQIDQDPSADFSDHSDVDDCFEPQVEVTETTEDSKEKVAAEISNHEETIEDENVHSDGSVGGGDIGNDIDNDSDEDEEFDEGKDVESGEERDSKELTGIDDESGEHKNVKIEEEKPSIDDEEYIKNVIAAAERSDDDDDSDKESNDSDYVPQKKASPPVKRGRGRPRKSLDSPPKSIKKTEGGARRGRKPGSKNKKTLMRERDMIIKEEEDDYGDYPCPVCNEMFNTMSKLDRHAKIRHEGAKIHKCNVCSKAFSRINHLKRHITSHSTIKPFRCTACPKSFNRRDHLKQHQKLHERTNDYECEVCQKQFNRADHLAKHKASKHGIGERICVMGEKKYECPLCHKFFTTEKYKDVHVAGHNGTKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPDNVMFNALHANALHANALHANALHANALHAQLAVAQLHHLARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01047646;
90% Identity
iTF_00459152; iTF_00911294; iTF_00736017;
80% Identity
-