Dcar022198.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diorhabda carinata
Gene Symbol
-
Assembly
GCA_029229535.1
Location
CM055263.1:43259273-43267602[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.048 4.4 8.5 2.3 2 23 151 172 150 172 0.96
2 16 1.7e-05 0.0016 19.3 4.5 1 23 177 199 177 199 0.98
3 16 0.00077 0.07 14.1 4.1 1 23 205 227 205 227 0.97
4 16 0.0084 0.77 10.8 2.1 1 19 233 251 233 252 0.96
5 16 1.1e-06 9.7e-05 23.1 0.2 1 23 261 283 261 283 0.98
6 16 0.0001 0.0091 16.9 0.2 1 23 514 537 514 537 0.96
7 16 2.9e-05 0.0027 18.6 5.0 1 23 543 565 543 565 0.98
8 16 8.4e-06 0.00077 20.3 4.2 1 23 571 593 571 593 0.98
9 16 2.3e-05 0.0021 18.9 1.5 1 23 599 622 599 622 0.95
10 16 0.011 0.99 10.5 1.4 1 23 636 658 636 658 0.86
11 16 0.00012 0.011 16.6 4.3 1 23 664 686 664 686 0.98
12 16 1.9e-06 0.00018 22.3 0.5 1 23 693 715 693 715 0.96
13 16 2.5e-06 0.00023 21.9 1.2 1 23 721 743 721 743 0.98
14 16 3.7e-07 3.3e-05 24.6 0.9 3 23 751 771 749 771 0.96
15 16 1.8e-05 0.0016 19.2 0.1 1 23 777 799 777 799 0.99
16 16 0.05 4.6 8.4 0.7 1 23 804 827 804 827 0.97

Sequence Information

Coding Sequence
ATGGAGAATGTAAATCTTAATCTGATTTGCAGAACTTGCAAATGTGTGAGTCCACATATGCGATCGCTCTTCGAGGGATATGAAAATCCTCATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTGATATGTGGAGATGGTTTGCCTACTTTGATATGTCAAATATGTGTAGAACAATTAAAAAACgcttttcttttcaaaaaacaagTGGAAAAAGTAGATGTTGGTTTAAGAGAGTACGCAAAAAATCTCaaagtaaatgaaattaaacaagAACTACAAAACTCGGAATTTATGGAATCTCTGAACACTCTCGATAGTATTTTAAATGAACCAGCTACAAAAGATGTGTCAATTACTGGAGAAACTGCTCCTCCTCAAAAGTTTGAAACTGACTATATTCAATTTATGGATAACAACCAAATGCTTCTTACATGTAGAGAATGTGCAAAAATGTTCACAACTTTGGAAGGTTTACGATGCCACAAACGTATTCACACAGGTGGTATGTACAAATGTAAACAGTGTGATAAAGAATACACAAGACTTAACCACCTACAACGCCATGAACAATCCCATAACAGAAGAAAAGTCCATGTTTGCAGAATTTGCAGTAAAACTTTAACAAGGATGGAACATTTAAAACGTCACTTGGTAACACATTTAAGGGAGAAACCTTTTTCATGTAAAACTTGTAATAGGGGTTTTAATCGGATTGAACATTTACACAATCATGCACCTAGATGTAAAGgtgACACTGTATATCCATGTGATATTTGCAATAAAGCCTTTAATCGTGAAGACAGCCTCGAGGTTCACAGAAAAATGCATGATTCTACCACTCCAAAGTTGCCTACCATTGAAAATCTCGATAATATTGAGGatcattattatcaaattgaTCAAGATCCTTCTGCTGATTTCTCTGATCATTCAGATGTAGATGAATGCTTTGAACCACAAGTAGAGGTGACTGAAACGACAGAAGATAATAAAGAAAAGGTCGCAGCTGAAATTTCAAATCAAGAAGAAGAAAGCATTCACAGTGATGGATCTATTGGTGGTGGAGATATTGATAATGATAGTGACGAAGATGAAGAATTTGATGAAGATAGAAAGGATATTGAAAGTGGGGAGGAGAGAGATAATAAAGATGTTTCTGGAGTTGATGATGAATGTGAAgaccaaaaaaatgttaaacttgAAGAAGAAAAACCAGCTGTTGATGAAGATGAggagtatattaaaaatattattgctgAGGTGGAAGGTGATGgaTCAGATGATGATGGTGATTCTGATAAAGAAAGTAATGATTCTGATTATGTTCCTCAGAAGAAGGCTTCACCACCTGTCAAACGTGGACGAGGAAGACCTCGTAAAAGTGTTGATTCTCCTCCAAAACCAATTAAGAAAGAAGGAGGAGCAAGAAGAGGTCGCAAACCCGGGtccaaaaataagaaaacattgATGAGAGAAAGAGATATGGTTATAAAAGAGGAAGAAGATGATTATGGAGATTATCCATGTCCAGTTTGTAATGAAATGTTTAATACTATGAGTAAATTGGACAGACATGCAAAGATCAGTCATGAAGGGGCCAAGATACACAAATGTAATGTATGCAGTAAAGCGTTCTCTAGAATTAATCATCTAAAGAGACACATCACTTCCCATTCAACTATTAAACCGTTCCGTTGTACCGCATGTCCCAAGAGTTTTAACAGGCGCGATCATCTTAAACAACATCAAAAATTACATGAAAGGACCAACGATTATGAATGTGAGGTCTGTCAGAAACAGTTCAATAGAGCTGATCACCTCGCCAAACATAAAGCATCTAAACATGGCATAGGAGAAAGAATTTGTGTAATGggcgaaaaaaaatatgaatgtcCTTTATGTCACAAATTCTTTACTACAGAGAAATATAAAGATGTGCATGTAGCTGGTCACAATGGTACTAAAGAATATTCTTGCAAAGTGTGTGAAAAAACGTTCTTGTCTAAATCTCATTTAACTGAACACATGAAATTCCACAATGAACATTCCAAGAAGTTCCTTTGTTCAGAATGTGGACAAAGATTTATAAGAAATGATTATTTGGTTATACACATGAGACGACATAgaggagaaaaaccattcaaatgcaAATATTGTGGAAAAGGTTTCCCGAGAACAACAGATCTGACTGTACATGAAAGGTACCATACTGGCGAAAAGACTCATTTATGTACAATTTGTGGTAGAGGATTTGGaagAGCATATAATCTCACTGTTCATATGAGAACACACACTGGTGAAAAACCATACCAGTGTACATACTGCGATGCTGCTTTCGCTCAAGGTAATGATCTGAAGGCTCATGTAAGACGCCACACAGGAGAGAGATTCCAATGTGAATTATGTACAGAAAGTTTCCTTATGGGCTACTTGTTAACACAACACAAGAGAACTGTCCATGGACTGAATGTGGTAAGCAACATAAGACGATTACAGCCAGTTCATAAACAAGAAAATCCGGATGAACCACCACCGATCACAATTCCACTACCAAAACCTGTAATTCCAGACAATGTCATGTTTAACGCCTTACATGCGAATGCTCTACATGCTAATGCCCTTCATGCCAATGCCCTTCATGCTAACGCTCTCCATGCGCAATTGGCTGTTGCGCAACTCCATCATTTAACTCGAGAATAA
Protein Sequence
MENVNLNLICRTCKCVSPHMRSLFEGYENPHQSPRIDEMLMACASVQVICGDGLPTLICQICVEQLKNAFLFKKQVEKVDVGLREYAKNLKVNEIKQELQNSEFMESLNTLDSILNEPATKDVSITGETAPPQKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHRKMHDSTTPKLPTIENLDNIEDHYYQIDQDPSADFSDHSDVDECFEPQVEVTETTEDNKEKVAAEISNQEEESIHSDGSIGGGDIDNDSDEDEEFDEDRKDIESGEERDNKDVSGVDDECEDQKNVKLEEEKPAVDEDEEYIKNIIAEVEGDGSDDDGDSDKESNDSDYVPQKKASPPVKRGRGRPRKSVDSPPKPIKKEGGARRGRKPGSKNKKTLMRERDMVIKEEEDDYGDYPCPVCNEMFNTMSKLDRHAKISHEGAKIHKCNVCSKAFSRINHLKRHITSHSTIKPFRCTACPKSFNRRDHLKQHQKLHERTNDYECEVCQKQFNRADHLAKHKASKHGIGERICVMGEKKYECPLCHKFFTTEKYKDVHVAGHNGTKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPDNVMFNALHANALHANALHANALHANALHAQLAVAQLHHLTRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01047646;
90% Identity
iTF_01106595;
80% Identity
-