Aaln044745.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agelastica alni
Gene Symbol
-
Assembly
GCA_950111635.2
Location
OX467716.1:28440466-28459196[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.041 10 8.5 2.3 2 23 151 172 150 172 0.96
2 16 1.5e-05 0.0036 19.3 4.5 1 23 177 199 177 199 0.98
3 16 0.00066 0.16 14.1 4.1 1 23 205 227 205 227 0.97
4 16 0.0072 1.8 10.8 2.1 1 19 233 251 233 252 0.96
5 16 9.5e-07 0.00023 23.0 0.3 1 23 261 283 261 283 0.98
6 16 5e-05 0.012 17.6 0.2 1 23 513 536 513 536 0.96
7 16 2.5e-05 0.0062 18.6 5.0 1 23 542 564 542 564 0.98
8 16 5.1e-07 0.00012 23.9 3.8 1 23 570 592 570 592 0.98
9 16 1.1e-05 0.0027 19.7 2.1 1 23 598 621 598 621 0.94
10 16 0.033 8.1 8.8 3.4 1 23 635 657 635 657 0.87
11 16 0.0001 0.025 16.6 4.3 1 23 663 685 663 685 0.98
12 16 1.7e-06 0.00041 22.3 0.5 1 23 692 714 692 714 0.96
13 16 2.1e-06 0.00052 21.9 1.2 1 23 720 742 720 742 0.98
14 16 3.2e-07 7.7e-05 24.6 0.9 3 23 750 770 748 770 0.96
15 16 1.5e-05 0.0038 19.2 0.1 1 23 776 798 776 798 0.99
16 16 0.043 11 8.4 0.7 1 23 803 826 803 826 0.97

Sequence Information

Coding Sequence
ATGGAGAACGTGAATCTTAATCAGATTTGCAGGACTTGCAAATGTGTTAGTCCTCACATGCGATCGCTATTCGAGGGATTTGAAAATCCACACCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTGATGTGTGGAGACGGTTTGCCGACTTTGATATGCCAAATATGTGTGGAACAATTGAAAAATGCTTTTCTTTTCAAAAGACAAGTGGAAAAAGTAGATGTTGGTTTAAGAGAATAcgcaaaaaatctaaaagtaaatgaaattaAACAAGAATTACAGAATTCTGAATTTATGGaatCTCTTAACACACTTGATAGTATACTAAATGATACTACTACTAAAGAGACATCCTGTACTGGAGAGACTGCTCCTCCTCCAAAATTTGAAACTGATTATATACAATTTATGGATAACAATCAAATGCTTCTTACTTGTAGAGAATGTGCTAAAATGTTCACCACATTGGAGGGACTACGTTGCCATAAACGTATCCACACTGGGGGTATGTACAAATGTAAACAGTGTGATAAAGAATATACAAGACTTAATCATCTGCAACGTCATGAACAATCTCACAATAGAAGAAAGGTCCATGTCTGCAGAATTTGCAGCAAAACGTTGACAAGAATGGAACATTTGAAGCGGCACTTGGTAACACATCTTAGAGAGAAACCATTTTCGTGCAAAACCTGTAATAGGGGATTTAACCGGATTGAGCATTTGCATAATCACGCTCCTAGATGCAAGGGCGATACTGTATATCCTTGTGATATTTGCAACAAGGCCTTCAATCGAGAAGATAGCCTCGAAGTTCATAAAAAAACGCACGACTCCTCGACTCCAAAGTTACCTACCATTGAAAATCTGGACAATATTGAAGATCATTATTATCAAATCGACCAGGAACCATCTGCTGAATTTTCTGATCATTCTGATGTAGATGATTGCTTTGAACCTCAGGTTGAAGTTACTGAAACTAACGAAGATGATAAACTAAAGatTGCTGCTGAAATTTCAAACcacgaagaaaaagaagaaagtgtTCATAGTGATGGGTCTATTGGTGGTGGAGATGTTGGTAATGACATGGATAATGACAGTGAGGACGATGAAGAATTTGATGAGGATAAAAAAGACGATGATAGTAGTGACGAAAAAGATCTTAAAGATTTAGCTGTAGGTGATGAAGAAGAAATGGAAGATAAGAAAGAAGTAAAATTAGAGGTCGATAAGCCGATGATTGATGATACTGAACAGTATATTAAAGACGTTATGGCAGAAGTCGACGGTGATGACAAAGAGAGTAATGATTCTGATTATATGCCCCAAAAGAAATTACCGCCCGTCAAGCGCGGTCGGGGTAGACCACGTAAAAGTGTCGACTCACCTCCCAAAGTGAAGAAATTACCAGGAACAGGAAGAAGAGGCCGCAAACCAGGTTCTAAAAATAAGTCTAAATTGGAGAGAGATAAagatattacaattaaaaaggaGAAAGACGATGATTACGGAGATTATCCTTGTCCTATTTGCAATGAAATGTTCAATACGATGAGTAAATTGGATAGACATGCTAAAATAAAACACGAAGGAGATAAGATACACAAATGCAACGTGTGCAGTAAGGCATTCTCTAGAATTAATCATCTGAAGAGACACATTACTTCCCATTCTACAATCAAACCTTTCCGTTGTAACGTATGTCCTAAGAGCTTTAACAGGCGCGACCACCTTAACCAACATCAAAAATTGCATGAGAGAACCAATGACCACGAATGTGACATTTGTCAAAAACCGTTTTCTAGGGCAGATCACCTTGCAAAGCATAAGGCCTCAAAACATGGCATAGGAGAGAGAATTTGTgTAATGGGCGAGAAAAAATACGAGTGTCACCTTTGTCACAAATTCTTCACCACAGAGAAATACAGAGACGTGCATGTGGCAGGTCACAACGGTACTAAGGAATATTCTTGCAAAGTATGCGAGAAAACGTTCTTGTCAAAGTCTCATTTGACAGAACACATGAAATTCCACAATGAACATTCCAAGAAGTTCCTCTGTTCGGAATGCGGACAAAGGTTTATTAGAAACGATTATTTGGTTATTCACATGAGAAGGCATCGAGGAGAGAAACCATTTAAATGCAAATATTGCGGAAAAGGTTTTCCGAGGACCACAGATCTTACTGTTCACGAAAGATATCATACTGGAGAAAAAACTCATTTGTGTACAATTTGCGGTAGAGGATTTGGcagAGCATATAATCTCACTGTCCATATGAGAACCCATACTGGTGAAAAGCCGTACCAATGTACCTACTGCGATGCTGCTTTTGCACAAGGAAATGATCTTAAAGCTCACGTCAGACGACACACTGGAGAGAGATTTCAATGCGAATTATGTACTGAAAGTTTCCTTATGGGTTATTTGTTGACACAACATAAGAGAACTGTCCATGggCTAAATGTTGTGAGCAACATAAGAAGATTGCAACCTGTACACAAACAAGAAAATCCCGATGAACCGCCTCCAATAACAATCCCATTACCGAAACCTGTAATTCCAGACAACGTAATGTTCAACGCGTTACATGCAAATGCTCTGCACGCTAATGCGTTGCACGCCAACGCTCTGCATGCTAATGCCCTTCACGCACAACTAGCTGTTGCGCAGCTACATCATTTAGCACGGGAATAA
Protein Sequence
MENVNLNQICRTCKCVSPHMRSLFEGFENPHQSPRIDEMLMACASVQVMCGDGLPTLICQICVEQLKNAFLFKRQVEKVDVGLREYAKNLKVNEIKQELQNSEFMESLNTLDSILNDTTTKETSCTGETAPPPKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHKKTHDSSTPKLPTIENLDNIEDHYYQIDQEPSAEFSDHSDVDDCFEPQVEVTETNEDDKLKIAAEISNHEEKEESVHSDGSIGGGDVGNDMDNDSEDDEEFDEDKKDDDSSDEKDLKDLAVGDEEEMEDKKEVKLEVDKPMIDDTEQYIKDVMAEVDGDDKESNDSDYMPQKKLPPVKRGRGRPRKSVDSPPKVKKLPGTGRRGRKPGSKNKSKLERDKDITIKKEKDDDYGDYPCPICNEMFNTMSKLDRHAKIKHEGDKIHKCNVCSKAFSRINHLKRHITSHSTIKPFRCNVCPKSFNRRDHLNQHQKLHERTNDHECDICQKPFSRADHLAKHKASKHGIGERICVMGEKKYECHLCHKFFTTEKYRDVHVAGHNGTKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPDNVMFNALHANALHANALHANALHANALHAQLAVAQLHHLARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01047646;
90% Identity
-
80% Identity
-