Lcap045239.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
-
Assembly
GCA_949126875.1
Location
OX421409.1:18632132-18643275[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.048 9.9 8.5 2.3 2 23 151 172 150 172 0.96
2 16 1.7e-05 0.0035 19.3 4.5 1 23 177 199 177 199 0.98
3 16 0.00078 0.16 14.1 4.1 1 23 205 227 205 227 0.97
4 16 0.0085 1.7 10.8 2.1 1 19 233 251 233 252 0.96
5 16 1.1e-06 0.00022 23.1 0.2 1 23 261 283 261 283 0.98
6 16 0.0001 0.021 16.9 0.2 1 23 512 535 512 535 0.96
7 16 2.9e-05 0.006 18.6 5.0 1 23 541 563 541 563 0.98
8 16 8.5e-06 0.0017 20.3 4.2 1 23 569 591 569 591 0.98
9 16 2.3e-05 0.0047 18.9 1.5 1 23 597 620 597 620 0.95
10 16 0.011 2.2 10.5 1.4 1 23 634 656 634 656 0.86
11 16 0.00012 0.025 16.6 4.3 1 23 662 684 662 684 0.98
12 16 2e-06 0.0004 22.3 0.5 1 23 691 713 691 713 0.96
13 16 2.5e-06 0.00051 22.0 1.2 1 23 719 741 719 741 0.98
14 16 3.7e-07 7.6e-05 24.6 0.9 3 23 749 769 747 769 0.96
15 16 1.8e-05 0.0037 19.2 0.1 1 23 775 797 775 797 0.99
16 16 0.05 10 8.4 0.7 1 23 802 825 802 825 0.97

Sequence Information

Coding Sequence
ATGGAGAACGTTAATCTTAATCTGATTTGCAGAACTTGCAAATGTGTTAGTCCACATATGCGGTCGCTCTTCGAGGGATATGAAAATCCTCATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTGATATGTGGAGATGGTTTGCCGACTTTAATATGCCAAATGTGTGTGGAACAACTGAAAAATGCTTTTCTTTTCAAAAAACAAGCGGAAAAAGTCGATGTTGGTCTAAGAGAGTACGCAAAAAATCTCAAAGTAAACGAAATCAAACAAGAATTACAAAACTCGGAATTTATGGaatcTCTCAACACTCTTGATAGTATATTGAATGAACCAGCTACTAAAGATGTATTAATTACCGGGGAAACTGCCCCTCCTCAAAAATTTGAAACTGACTACATCCAATTTATGGACAATAATCAGATGCTTCTTACATGTAGAGAATGTGCAAAAATGTTCACCACTCTGGAAGGCCTACGATGCCACAAACGTATTCACACAGGTGGTATGTATAAATGTAAACAGTGTGATAAAGAATATACAAGACTTAACCATCTACAACGCCATGAACAATCCCATAACAGAAGAAAAGTCCATGTTTGCAGAATTTGCAGCAAAACTTTAACAAGAATGGaacatttaaaacgtcacttggTTACACATTTAAGAGAGAAGCCATTTTCGTGTAAAACTTGTAATAGAGGCTTTAATAGGATTGAACATTTACACAATCACGCACCTAGATGTAAAGGAGACACTGTGTATCCATGTGACATTTGCAATAAAGCTTTTAACCGTGAAGACAGCCTTGAAGTTCATAGGAAAATGCATGATTCTACCACTCCAAAGTTGCCTACTATTGAAAATCTTGACAATATTGAGGATCACTATTATCAAATCGACCAAGAACCCTCTGCCGATTTTTCTGATCATTCTGATGTAGATGAATGTTTTGAGCCACAAATAGAAGTTACTGAAACAACTGAGGATAGTAAAGAAaagATTGCTGCTGAAATTTCAAATCAAGAAGAAACTCAAGAAGAAGAAAGTATTCACAGTGATGGATCTATTGGTGGTGGAGACATGGGAAATGATATTGACATTGAAAGTGACGAGGACGAGGAATTTGATGAAGATAGAAAGGATATGGATGAAGGGGCTGGTGTAGTTGAGGAATCTGAAgaccaaaaaaatgttaaaattgaagaaaaactaTCAATTGACTACGATGAGGAGGAATacatcaaaaatgttattgctGGAGTTGATGGATCAGATGATGATGATTCTGATAAGGAAAGCAACGATTCTGATTATACTCCTCAAAAGAAAGCATCGCCACCTGTGAAACGTGGACGAGGTAGACCTCGTAAAAGTCTCGATTCGCCTCCTAAACCAATCATAAAAACAGAAGGAGGAAGTAGAAGAGGTCGGAAACCCGGAtcaaagaataaaaaaacattgatgAGAGAAAGAGATTTGATTATaaaagaggaagaagaagaCTATGGAGATTATCCCTGTCCTGTTTGTAATGAAATGTTCAATACTATGAGTAAATTGGATCGGCATGCTAAAATTAGACACGAAGGAGCCAAGATACACAAATGTAATGTATGCAGTAAAGCATTCTCTAGAATTAATCACCTAAAGAGACACATCACGTCCCATTCGACTATCAAACCGTTCCGTTGTACCGCATGTCCCAAGAGCTTTAACAGACGCGATCATCTTAAACAACATCAAAAGTTGCACGAAAGGACCAACGATTACGAATGCGAGGTATGTCAGAAACAGTTCAATAGAGCTGATCATCTCGCTAAACATAAGGCATCTAAACACGGCATAGGAGAAAGAATTTGTGTAATGGGCGAGAAAAAATACGAATGTCCGTTATGTCACAAATTTTTCACAACGGAGAAATACAAAGACGTGCATGTAGCCGGTCACAACGGTACTAAAGAATATTCTTGCAAAGTATGCGAAAAAACGTTCTTATCGAAATCACATTTGACAGAACACATGAAATTCCACAATGAACATTCCAAGAAGTTCCTTTGTTCCGAATGCGgacaaagatttattagaaaTGATTATTTGGTTATACACATGAGACGACATAGAGGAGAGAAACCCTTCAAATGCAAATATTGCGGAAAAGGTTTCCCAAGAACTACAGATCTGACTGTTCATGAAAGGTACCACACTGGAGAAAAAACCCATTTGTGTACGATTTGTGGAAGAGGATTTGGAAGAGCATACAACCTTACTGTTCATATGAGAACACACACCGGCGAAAAACCGTATCAATGTACGTACTGCGATGCAGCCTTCGCTCAAGGTAATGACCTTAAGGCTCACGTGAGACGCCATACCGGAGAGAGATTCCAATGCGAATTATGTACTGAAAGTTTCCTTATGGGATACTTGTTAACGCAACACAAGAGAACTGTGCATGGACTGAATGTTGTTAGCAACATAAGACGACTGCAGCCGGTTCATAAACAAGAAAATCCCGACGAACCGCCGCCAATTACAATCCCATTACCGAAACCTGTAATTCCAGATAATGTCATGTTCAACGCCTTACATGCGAACGCCCTACACGCTAACGCTCTTCACGCCAACGCTCTCCACGCGCAGTTGGCAGTCGCCCAACTACATCATTTAGCTCGGGAATAA
Protein Sequence
MENVNLNLICRTCKCVSPHMRSLFEGYENPHQSPRIDEMLMACASVQVICGDGLPTLICQMCVEQLKNAFLFKKQAEKVDVGLREYAKNLKVNEIKQELQNSEFMESLNTLDSILNEPATKDVLITGETAPPQKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHRKMHDSTTPKLPTIENLDNIEDHYYQIDQEPSADFSDHSDVDECFEPQIEVTETTEDSKEKIAAEISNQEETQEEESIHSDGSIGGGDMGNDIDIESDEDEEFDEDRKDMDEGAGVVEESEDQKNVKIEEKLSIDYDEEEYIKNVIAGVDGSDDDDSDKESNDSDYTPQKKASPPVKRGRGRPRKSLDSPPKPIIKTEGGSRRGRKPGSKNKKTLMRERDLIIKEEEEDYGDYPCPVCNEMFNTMSKLDRHAKIRHEGAKIHKCNVCSKAFSRINHLKRHITSHSTIKPFRCTACPKSFNRRDHLKQHQKLHERTNDYECEVCQKQFNRADHLAKHKASKHGIGERICVMGEKKYECPLCHKFFTTEKYKDVHVAGHNGTKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPDNVMFNALHANALHANALHANALHAQLAVAQLHHLARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01047646;
90% Identity
iTF_01106595;
80% Identity
-