Gnym006906.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021704.1:45363999-45372355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.046 7.1 8.5 2.3 2 23 151 172 150 172 0.96 2 16 1.6e-05 0.0025 19.3 4.5 1 23 177 199 177 199 0.98 3 16 0.00073 0.11 14.1 4.1 1 23 205 227 205 227 0.97 4 16 0.008 1.2 10.8 2.1 1 19 233 251 233 252 0.96 5 16 1e-06 0.00016 23.1 0.2 1 23 261 283 261 283 0.98 6 16 0.0001 0.015 16.8 0.2 1 23 512 535 512 535 0.96 7 16 2.8e-05 0.0043 18.6 5.0 1 23 541 563 541 563 0.98 8 16 8e-06 0.0012 20.3 4.2 1 23 569 591 569 591 0.98 9 16 2.2e-05 0.0034 18.9 1.5 1 23 597 620 597 620 0.95 10 16 0.01 1.6 10.5 1.4 1 23 634 656 634 656 0.86 11 16 0.00012 0.018 16.6 4.3 1 23 662 684 662 684 0.98 12 16 1.8e-06 0.00028 22.3 0.5 1 23 691 713 691 713 0.96 13 16 2.4e-06 0.00036 21.9 1.2 1 23 719 741 719 741 0.98 14 16 3.5e-07 5.4e-05 24.6 0.9 3 23 749 769 747 769 0.96 15 16 1.7e-05 0.0026 19.2 0.1 1 23 775 797 775 797 0.99 16 16 0.048 7.4 8.4 0.7 1 23 802 825 802 825 0.97
Sequence Information
- Coding Sequence
- ATGGAGAACGTTAATCTTAATCTGATTTGCAGAACTTGCAAATGTGTTAGTCCACATATGCGGTCGCTCTTCGAGGGATATGAAAATCCTCATCAGAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAATTCAGGTGATATGTGGAGATGGTTTGCCGACTTTAATATGCCAAATGTGTGTGGAACAACTGAAAAATGCTTTTCTTTTCAAAAAACAAGCGGAAAAAGTAGATGTTGGTCTAAGAGAGTACGCAAAAAATCTCAAAGTAAACGAAATCAAACAAGAATTACAAAACTCGGAATTTATGGAATCTCTCAACACTCTTGATAGTATATTGAACGAACCAGCTTCTAAAGATGTATTAATTACTGGAGAAACTGCCCCTCCTCAAAAATTTGAAACTGACTACATTCAATTTATGGACAACAATCAGATGCTTCTTACATGTCGAGAATGTGCAAAAATGTTCACCACTCTGGAAGGCCTACGATGCCACAAACGTATTCACACAGGTGGCATGTATAAATGTAAACAGTGTGATAAAGAATATACAAGACTTAACCATCTACAACGCCACGAACAATCCCATAACAGAAGAAAAGTCCACGTTTGCAGAATTTGCAGTAAAACTTTAACAAGAATGGAACATTTAAAGCGTCACTTGGTTACACATTTAAGAGAGAAGCCATTTTCTTGTAAAACTTGCAATAGAGGTTTTAATAGAATTGAACATTTACACAATCACGCACCTAGATGTAAAGGGGACACTGTTTATCCATGTGACATTTGCAATAAAGCTTTTAACCGTGAAGACAGCCTTGAAGTTCATAGGAAAATGCACGATTCCACCACTCCAAAGTTGCCTACTATTGAAAATCTCGACAATATTGAAGATCATTATTATCAAATCGACCAAGAACCATCTGCCGATTTTTCTGATCATTCTGATGTAGATGATTGTTTCGAGCCTCAAATAGAAGTTACTGAAACAACTGAGGATAGTAAAGAAAAGATTGCTgctgaaatttcaaatcaagaAGAAACTCAAGAAGAAGAAAGTATTCACAGTGATGGATCTATTGGTGGTGGAGACATGGGAAATGATATTGATATCGAAAGTGATGAGGACGAAGAGTTTGATGAAGATAGAAAGGATATGGACGAAGGGGTTGGTGTAGTTGATGAACCTGAAGaccaaaaaaatgttaaaatcgAAGATAAACTATCGATTGACTACGATGAAGAGGAATacatcaaaaatgttattgctGGAGTTGACGgATCAGACGATGATGATTCTGATAAAGAAAGCAACGATTCTGATTATACTCCACAAAAGAAAGCATCACCACCTGTGAAACGCGGACGAGGTAGACCACGTAAAAGTTTGGATTCGCCTCCTAAACCGATAATAAAAACAGAAGGAGGAAGTCGAAGAGGTCGTAAACCAGGATCCAAGAATAAAAAAACGTTGATGAGAGAAAGAGATTTGATTATAAAAGAGGAAGAAGAAGATTATGGAGATTACCCCTGTCCCGTTTGCAATGAAATGTTCAATACTATGAGCAAATTGGATCGGCATGCTAAAATCAAACATGAAGGAGCCAAGATACACAAATGTAATGTATGCAGTAAAGCGTTCTCTCGAATAAATCACCTAAAAAGACACATCACGTCCCATTCGACTATCAAACCGTTCCGTTGTACCGCATGTCCCAAGAGCTTTAACAGACGCGATCATCTTAAACAACATCAAAAGTTGCACGAAAGGACCAACGATTACGAATGCGAGGTATGTCAGAAACAGTTCAATAGAGCTGATCATCTCGCTAAACATAAGGCATCTAAACACGGCATAGGAGAAAGAATTTGTGTAATGGGCGAGAAAAAATACGAATGTCCGCTATGCCACAAATTTTTCACGACGGAGAAATACAAAGACGTGCACGTGGCCGGTCACAACGGCACTAAAGAATATTCATGCAAAGTTTGCGAAAAAACGTTCTTATCGAAATCCCATTTGACGGAACACATGAAATTCCACAACGAACATTCCAAAAAGTTCCTTTGTTCTGAATGCGGACAAAGATTTATTAGAAATGATTATTTGGTCATACACATGAGACGACATAGAGGCGAGAAACCGTTCAAATGCAAATATTGCGGAAAAGGTTTCCCAAGGACTACAGATCTGACTGTTCACGAAAGGTACCACACTGGAGAAAAAACTCATTTGTGCACGATTTGCGGAAGAGGATTCGGAAGAGCTTACAATCTTACAGTTCACATGAGAACACACACCGGCGAAAAACCGTACCAGTGTACGTACTGCGATGCAGCCTTCGCTCAAGGTAACGACCTTAAGGCTCACGTTAGACGCCATACCGGAGAGAGATTCCAATGCGAATTATGTACTGAAAGTTTCCTTATGGGATATTTGTTAACGCAACACAAGAGAACTGTACATGgaCTGAATGTTGTGAGCAACATAAGACGACTGCAGCCGGTTCACAAACAAGAAAACCCGGACGAACCGCCGCCAATAACAATCCCACTACCGAAACCTGTAATTCCAGATAATGTCATGTTCAACGCCTTACACGCGAACGCTCTACACGCCAACGCTCTTCACGCCAACGCTCTTCATGCTAACGCTCTCCACGCGCAATTGGCAGTTGCCCAACTGCATCATTTAGCTCGGGAATAA
- Protein Sequence
- MENVNLNLICRTCKCVSPHMRSLFEGYENPHQSPRIDEMLMACASIQVICGDGLPTLICQMCVEQLKNAFLFKKQAEKVDVGLREYAKNLKVNEIKQELQNSEFMESLNTLDSILNEPASKDVLITGETAPPQKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHRKMHDSTTPKLPTIENLDNIEDHYYQIDQEPSADFSDHSDVDDCFEPQIEVTETTEDSKEKIAAEISNQEETQEEESIHSDGSIGGGDMGNDIDIESDEDEEFDEDRKDMDEGVGVVDEPEDQKNVKIEDKLSIDYDEEEYIKNVIAGVDGSDDDDSDKESNDSDYTPQKKASPPVKRGRGRPRKSLDSPPKPIIKTEGGSRRGRKPGSKNKKTLMRERDLIIKEEEEDYGDYPCPVCNEMFNTMSKLDRHAKIKHEGAKIHKCNVCSKAFSRINHLKRHITSHSTIKPFRCTACPKSFNRRDHLKQHQKLHERTNDYECEVCQKQFNRADHLAKHKASKHGIGERICVMGEKKYECPLCHKFFTTEKYKDVHVAGHNGTKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPDNVMFNALHANALHANALHANALHANALHAQLAVAQLHHLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047646;
- 90% Identity
- iTF_01106595;
- 80% Identity
- -