Nina002316.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365791.1:25078179-25082078[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 1.4e-08 35.2 0.0 4 39 163 199 160 203 0.89 2 4 5.9e-11 4e-08 33.7 0.3 2 39 215 252 214 255 0.92 3 4 4.1e-16 2.8e-13 50.2 0.2 2 45 270 314 269 314 0.97 4 4 2.3e-18 1.6e-15 57.4 0.0 1 43 321 364 321 366 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGAACGGAAAGATTTAACGTGAAAAGCGAGCCACAATCTGATGAAGAGGACTTTAATTCACAATAcgtaaaagcttattttaagaATCAGTTATCAGACTACCAGccaataaaattagaaaatattccAAGCGAGAATGCCTCTTCCAACCTTTTACATCAGCTGCagGGTTCGCTGGAGGAGCTGGCGCCAGCAGGCCCGGCAGCTACGCCCGTCAGCGCACCTCTGCCGGCTCCGAGGGACACCTCACTTGCCACGCTGCAGCCCGCCGCACACCACGAGGGAACATCATTAATCGATAGACACATACAAATGATGACTGCTAACGAGATAGCTGACTCTTCAGAATTTGTGCCCCTCATGGCTATCAAGGACGAGCCCAACTCGGAGGGAGaacATCTAAGCGGTGATGATACTAGCGACTCCAGTGGTCCGACGACGGAACCCGTCCGGGGTGGCCCCAAGACTTGGACGCAACAGGACATGGATAAAGCGTTGGAGGCGCTCCGGAAACACAACATGAGTCTTACTAAGgcATCTGCAACATACGGCATTCCATCCACAACTCTTTGGCAGCGAGCTCATCGCCTCGGCATTGACACACCTAAGAAGGAGGGGAGTTCTAAGTCCTGGAGCGAAGCGGACTTACGTGGTGCACTGCATGCGCTACGAGCCGGTGCCATATCTGCCAACAAAGCCAGCAAGGCCTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCTCGGCGCGAGGGCATTCGCCTCGCTGCGCCCTTCAACGCTGCCCCGACTGCCTGGCGCCGGGATGACCTCGCGCGCGCCCTCGCTGCCATCCGCGCCGGCGCCGCCTCCGTGCAACGTGCTGCCGCTACCTACGGGATACCCACCGGAACTCTGTATGGAAGGTGTAAAAGAGAAGGCATAGAGCTTTCTCGCTCCAACCCGACGCCGTGGTCTGAGGACGCTATGGGAGAAGCTTTAGAAGCTGTTAGAGTAGGTCAGATGTCCATCAATCAAGCGGCCATTCACTACAATCTTCCTTACTCGTCGCTGTACGGGCGCTTCAAACGCTGCAAATATCAGTCGTTACAGACCCAGCCACAACAAGAGCTACCAAAATACGAAAATGAAAACCAGCAACAAGAAATTTTCTACCAACACGCGCccacacacacagacatacacaaCCCATTTATGCACGAAATGAGCGACATAGACACTTACTCACACATGTACTACTCACATTGTAATGTTACCAGCTGA
- Protein Sequence
- MPGTERFNVKSEPQSDEEDFNSQYVKAYFKNQLSDYQPIKLENIPSENASSNLLHQLQGSLEELAPAGPAATPVSAPLPAPRDTSLATLQPAAHHEGTSLIDRHIQMMTANEIADSSEFVPLMAIKDEPNSEGEHLSGDDTSDSSGPTTEPVRGGPKTWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRDDLARALAAIRAGAASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSLQTQPQQELPKYENENQQQEIFYQHAPTHTDIHNPFMHEMSDIDTYSHMYYSHCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418889; iTF_00419693; iTF_00420465; iTF_00421273; iTF_00959337; iTF_01034456; iTF_00960093; iTF_00842574;
- 90% Identity
- iTF_01034456; iTF_00960093; iTF_00959337;
- 80% Identity
- -