Isal003785.2
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000022.1:4476731-4482501[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 1.4e-08 35.0 0.0 4 39 202 238 199 242 0.89 2 4 6.1e-11 4e-08 33.5 0.3 2 39 254 291 253 294 0.92 3 4 4.2e-16 2.7e-13 50.1 0.2 2 45 309 353 308 353 0.97 4 4 5.5e-18 3.6e-15 56.1 0.0 1 42 360 402 360 405 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGAACGGAAAGATTTAACGTGAAAAGCGAGCCACAATCTGATGAAGAGGACTTTAATTCACAATACgtaaaagcatattttaaaaatcaggtTTACTACCAGccaataaaattagaaaatattcaaaacgagaATGCGTCCTCCAACCTGTTACATCAGCTGCagGGCTCGCTGGAGGAGCTGACCCCTGCAGGCCCAGCCGCCACGCCCGTCAGCGCGCCGTTACCGGCCCCGAGGGATACCTCACTAGCCACGCTGCAACCCGCCGCGCACCATGAGGTACCACACACCAACGacctaaatcttttttttatatggatCAAAACCGCCGACCATTTCATGccGACAGCACTAGGTGCGATATATGATTatcaaaagtacaaaaaattaCAGGGAACATCATTAATCGATAGACACATACAAATGATGACTGCCAACGAGATAGCGGACTCTTCAGAGTTCGTGCCTCTCATGGCTATCAAGGACGAGCCAACCTCGGAGGGAGaacaGGCACATCTAAGTGGCGATGACACAAGTGACTCCAGTGGTCCAGCGACGGAACCCGTCCGGGGTGGCCCAAAGACGTGGACGCAACAGGACATGGATAAAGCTTTGGAGGCGCTGCGGAAACACAATATGAGTCTTACTAAGgcATCTGCAACATACGGTATTCCGTCCACAACCCTTTGGCAGCGAGCTCATCGCCTCGGCATCGACACGCCCAAAAAGGAGGGTAGTTCTAAATCCTGGAGCGAAGCGGACTTACGAGGAGCACTACATGCGCTACGAGCCGGTGCCATATCTGCCAACAAAGCCAGCAAGGCTTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCCCGGCGCGAAGGCATTCGTCTCGCCGCGCCCTTCAACGCCGCGCCGACCGCCTGGCGCCGTGACGACCTCGCGCGCGCGCTGGCTGCGATCCGCGCTGGCGCCGCCTCTGTGCAACGAGCCGCCGCCACTTACGGGATACCCACCGGAACTTTGTACGGAAGGTGTAAAAGAGAAGGCATAGAACTGTCTCGCTCAAACCCGACGCCGTGGTCTGAGGACGCTATGGGAGAAGCTTTAGAAGCTGTTagAGTGGGTCAGATGTCCATCAATCAAGCTGCAATTCATTACAACCTTCCTTACTCGTCACTGTACGGGCGCTTCAAGCGCTGCAAATACCAACCACTACAGACCCAGCCACAACAAGAGCCACCAAAATACGAAAATGAACACCCACAACAAGACATATTCTACCAACATGCGCCCACACACGCAGACATAACTAACCAATACATACACGAAATGAGCGACATAGATACTTACGCACACATGTACTACTCGCACTGTAATGTTACCAGCTGA
- Protein Sequence
- MPGTERFNVKSEPQSDEEDFNSQYVKAYFKNQVYYQPIKLENIQNENASSNLLHQLQGSLEELTPAGPAATPVSAPLPAPRDTSLATLQPAAHHEVPHTNDLNLFFIWIKTADHFMPTALGAIYDYQKYKKLQGTSLIDRHIQMMTANEIADSSEFVPLMAIKDEPTSEGEQAHLSGDDTSDSSGPATEPVRGGPKTWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRDDLARALAAIRAGAASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPLQTQPQQEPPKYENEHPQQDIFYQHAPTHADITNQYIHEMSDIDTYAHMYYSHCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033644;
- 90% Identity
- -
- 80% Identity
- -