Dchr010293.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- -
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000057.1:972131-979596[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 8.9e-09 35.1 0.0 4 39 167 203 164 207 0.89 2 4 1.2e-11 5e-09 35.9 0.2 1 39 218 256 218 259 0.94 3 4 4.1e-16 1.7e-13 50.2 0.2 2 45 274 318 273 318 0.97 4 4 1.8e-18 7.5e-16 57.8 0.0 1 44 325 369 325 370 0.95
Sequence Information
- Coding Sequence
- ATGCCGGGAACAGACAGATTCAATGTTAAATGTGAGCCGCCTTCAGACGATGAGGATGTTAGTTCACACTACGTTACAACATACTTACACACAGAGAGATCGGAATATTATCCAATTAAATTGGAGAACGTCCATTGTGAAGATCGGTCGTCGGATCTATTACACCAATTGCAGGGTTCGTTGGAGGAGTTGGCGCCGGCGCCGGCGGGTCCTGCCGCCACCCCGGTGAGCGCGGCCCTACCAGCACCCTCACGAACCTCGCTGGCCACGCTCGAACCGGCACAACACCATGAGGGGTCCTCACTTATAGACAGGCACATACAAATGATGACAGCAAATGAAGTTGCCGACTCAGCTGAATTCGTGCCTCTCATGGCTATCAAAGACGAGCCCACTTCGGAAGGAGAACAGCACCATCTCAGTGGTGATGATACCAGTGACTCAAGTGGCCCGGCGCCGGAGCCTGTCCGCGGCAGCCCAAAGACTTGGACCCAACAAGACATGGACAAAGCGTTGGAGGCCCTCCGGAAACATAACATGAGCCTTACTAAGGCGTCCGCGACCTACGGGATTCCGTCCACAACCTTATGGCAACGAGCCCACCGCCTCGGCATCGACACTCCCAAGAAAGAAGGCAGTTCGAAGTCTTGGAGCGAAGAGGACCTACGTGGGGCCTTACACGCGTTACGCGCCGGCGCCATCTCTGCTAATAAGGCCAGCAAAGCATACGGTATTCCCAGCAGCACGTTGTATAAGATAGCTCGTCGCGAGGGGATCCGTCTGGCCGCTCCATTCAACGCGGCGCCCACGGCCTGGCGGAGGGACGACCTGGCGCGGGCCCTAGCAGCCATCAGGGCCGGCGCCGCCTCCGTGCAGCGAGCCGCCGCCACGTACGGCATACCCACAGGTACTCTATACGGAAGGTGTAAGAGAGAAGGCATCGAGCTGTCTCGCTCTAACCCGACGCCGTGGTCGGAGGACGCCATGGGCGAGGCGTTGGAAGCCGTCCGAGTGGGTCAGATGTCCATCAACCAGGCAGCCATACATTATAACCTGCCGTACTCGTCCCTGTACGGTCGCTTCAAACGATGCAAATATCAAACACTacagAGCCAGCCGCCGCAGGAGCTACCGAAGTATGAAGGAGAGTTCCATCAACAGGGACTGTACTGTCAACACACGGACGCACACACAGACGTACAcaacacgcacacacacatacacaaccTGAACGACATagatacatacacacacatgtaCTACTCGCACTGTAATGTTACCAGCTGA
- Protein Sequence
- MPGTDRFNVKCEPPSDDEDVSSHYVTTYLHTERSEYYPIKLENVHCEDRSSDLLHQLQGSLEELAPAPAGPAATPVSAALPAPSRTSLATLEPAQHHEGSSLIDRHIQMMTANEVADSAEFVPLMAIKDEPTSEGEQHHLSGDDTSDSSGPAPEPVRGSPKTWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEEDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRDDLARALAAIRAGAASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTLQSQPPQELPKYEGEFHQQGLYCQHTDAHTDVHNTHTHIHNLNDIDTYTHMYYSHCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033644;
- 90% Identity
- iTF_00419693;
- 80% Identity
- -