Dmel013769.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- -
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010007556.1:16854970-16856703[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 2.4e-08 35.2 0.0 4 39 116 152 113 156 0.89 2 4 3.2e-11 6.2e-08 33.9 0.3 2 39 168 205 167 208 0.92 3 4 2.2e-16 4.3e-13 50.4 0.2 2 45 223 267 222 267 0.97 4 4 9.5e-19 1.8e-15 58.0 0.0 1 44 274 318 274 319 0.95
Sequence Information
- Coding Sequence
- ATGGCGAATTTTTCTGATTTGAGTTTTCACGAATCAGTCCAAGTCAATCAGGCTCTACAGAGGAGAGGTCTAGAAAGAGGTACGAACGGTATGTGGAGTAGTCGTGCTGGTTGTTTTGAATGCAAAGAGACTGTTTTAGGTgGGTCTTCACTTATAGACAGACACGTACAAATGATGACAGCAAATGAAGTTGCCGACTCAGCAGAATTCGTGCCTCTCATGGCTATCAAAGATGAGCCCACTTCGGAAGGAGAACAGCACCAACTCAGTGGTGACGACACCAGCGACTCCAGTGGTCCGGCGCTGGAGCCCGTTCGCGGCAGCCCAAAGACTTGGACACAGAAAGACATGGACAAAGCGTTAGAAGCCCTCCGGAAACATAACATGAGCCTGACTAAGGCGTCTGCGACTTACGGGATTCCGTCCACAACCTTATGGCAACGAGCTCACCGCCTCGGCATCGACACTCCTAAGAAAGAAGGCAGTTCGAAGTCTTGGAGCGAAGCGGACCTACGGGGAGCCTTACACGCGTTACGAGCCGGCGCCATCTCCGCTAACAAGGCTAGCAAAGCTTACGGCATCCCCAGCAGCACGTTGTATAAGATCGCTCGTCGCGAGGGGATCCGGCTGGCAGCTCCATTCAACGCGGCGCCCACAGCCTGGCGGAGGGACGACCTGGCGCGAGCCCTGGCCGCCATCAGGGCCGGTGCTGCCTCCGTGCAGCGAGCCGCCGCCACCTACGGCATACCCACCGGTACACTATACGGAAGGTGTAAGAGAGAAGGTATCGAGCTGTCCCGGTCTAACCCGACGCCGTGGTCGGAGGACGCCATGGGCGAGGCGTTAGAAGCTGTGAGAGTTGGTCAGATGTCCATCAACCAGGCAGCCATACATTATAACCTGCCGTACTCGTCCCTGTACGGTCGCTTTAAGCGATGTAAATACCAAACACTACAGAGTCAGCCGCCGCAGGAGCTACCGAAGTATGAAGGTGAGTTCCATCAACAGGGACTGTACTGCCAACACGCGGACACACACACAGACGTACAcaacacacactcacacatacacAACCTCAACGACATAGACACCTACACACACATGTACTACTCGCACTGTAATGTTACCAGCTGA
- Protein Sequence
- MANFSDLSFHESVQVNQALQRRGLERGTNGMWSSRAGCFECKETVLGGSSLIDRHVQMMTANEVADSAEFVPLMAIKDEPTSEGEQHQLSGDDTSDSSGPALEPVRGSPKTWTQKDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRDDLARALAAIRAGAASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTLQSQPPQELPKYEGEFHQQGLYCQHADTHTDVHNTHSHIHNLNDIDTYTHMYYSHCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033644;
- 90% Identity
- iTF_00419693;
- 80% Identity
- -