Dere004853.1
Basic Information
- Insect
- Danaus eresimus
- Gene Symbol
- -
- Assembly
- GCA_018231745.1
- Location
- DVQP01002394.1:1-3629[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5e-12 1e-08 35.4 0.0 4 39 109 145 106 149 0.89 2 4 1.4e-11 3e-08 33.9 0.3 2 39 161 198 160 201 0.92 3 4 9.7e-17 2e-13 50.5 0.2 2 45 216 260 215 260 0.97 4 4 3.3e-18 7e-15 55.2 0.0 1 41 267 308 267 312 0.92
Sequence Information
- Coding Sequence
- GGTTCGTTGGAGGAGCTGGTGCCGGCGCCGGCGGGGCCTGCCGCCACACCGGTGAGCGCGGCCTTACCAGCGCCCGCACGGACCTCGCTGGCCACGCTCGAACCCGCACAGCACCATGAGGGGTCGTCACTTATAGACAGACACATACAAATGATGACAGCAAATGAAGTTGCCGACTCGGCAGAATTCGTGCCTCTCATGGCTATCAAGGATGAGCCCGCGTCGGAAGGAGAACAGCACCACTTTAGTGGTGACGACACAAGCGACTCCAGTGGTCCGGCGCCGGAGCCCGTTCGCGGGAGTCCAAAGACTTGGACCCAGCAAGACATGGACAAAGCGTTAGAGGCCCTCCGAAAACATAACATGAGCCTCACTAAGGCGTCCGCGACCTACGGGATTCCGTCCACCACCTTATGGCAACGAGCTCACCGCCTCGGCATCGACACCCCCAAGAAAGAAGGCAGCTCGAAGTCTTGGAGCGAAGCGGACCTGCGGGGGGCCTTACATGCGTTACGCGCCGGCGCCATCTCCGCTAACAAGGCCAGCAAAGCTTACGGTATCCCCAGCAGCACGTTGTATAAGATCGCTCGTCGCGAGGGTATCCGGCTGGCCGCTCCGTTCAACGCGGCGCCCACAGCCTGGCGGAGGGACGACCTGGCGCGGGCCCTGGCCGCCATCAGGGCCGGCGCCGCCTCCGTGCAGAGAGCCGCCGCCACCTACGGCATACCCACCGGCACTCTGTACGGGCGGTGTAAGAGAGAAGGAATCGAGCTGTCTCGCTCCAACCCGACGCCGTGGTCGGAGGACGCCATGGGCGAGGCGCTGGAAGCTGTCCGGGTGGGTCAGATGTCCATCAACCAGGCGGCCATACACTATAACCTGCCCTACTCCTCCCTGTACGGTCGCTTCAAGCGCTGCAAACATCAGACGCTGCAGAGCCGGCCGCCGCAGGAGCTGCCTCAGTACGACGGCGACTTCCCGCAACAGGGCCTGTGCTGTCAGCGCGCggacgcacacgcacacacacacgcacacgcacacgcacacacacacaacctGCACGACATCGACAGCCACACACACATGTACTACTCGCACTGCGACGTCACCAGCTGA
- Protein Sequence
- GSLEELVPAPAGPAATPVSAALPAPARTSLATLEPAQHHEGSSLIDRHIQMMTANEVADSAEFVPLMAIKDEPASEGEQHHFSGDDTSDSSGPAPEPVRGSPKTWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRDDLARALAAIRAGAASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKHQTLQSRPPQELPQYDGDFPQQGLCCQRADAHAHTHAHAHAHTHNLHDIDSHTHMYYSHCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033644;
- 90% Identity
- iTF_00418889; iTF_00420465;
- 80% Identity
- -