Mmin016287.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Molorchus minor
Gene Symbol
-
Assembly
GCA_029963825.1
Location
JAPWTJ010000871.1:1-10220[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00053 0.048 14.9 4.1 1 23 162 184 162 184 0.97
2 11 1.6e-05 0.0015 19.7 1.5 1 23 190 212 190 212 0.98
3 11 1.6e-05 0.0014 19.7 0.7 1 23 218 241 218 241 0.95
4 11 0.01 0.93 10.9 3.5 1 21 247 267 247 269 0.95
5 11 0.00016 0.015 16.5 1.9 1 23 275 297 275 297 0.99
6 11 3.3e-06 0.0003 21.9 1.6 1 23 303 325 303 325 0.99
7 11 0.00042 0.038 15.2 1.4 1 23 333 356 333 356 0.97
8 11 9.5e-05 0.0087 17.2 2.4 2 23 363 384 362 384 0.96
9 11 0.00016 0.015 16.5 0.3 1 23 390 412 390 412 0.99
10 11 2.1e-06 0.00019 22.5 4.5 1 23 418 441 418 441 0.97
11 11 6.2e-07 5.7e-05 24.1 1.1 1 23 455 477 455 477 0.96

Sequence Information

Coding Sequence
GAAGATGATGGAGATGGGGAAGAAGGTACCTATTTTGTGGACCAGGCCGGGCATTATTATTTTCAAGCAAAAGGAGATACTCAACCTGTCATGACGGTTATGTCTGGATTGGGAGATTCTTCAGGTGGAGACGGAGAAGAGTATATAATCAACAATGAAAACGATGGTGAAGAAGCTGAGGATGGAGAGGAGACACTACAAGTACAAGGTGGAGAAAACAATCAGATATTAATAAATTCTGGAAATGCTTACCAAAGAGTTACCGTTGTTCCAGCAGATACAAACTCTGGAGAATTAAGTTATGTTCTCATTGTACAAGATCCTGACATGAAAGATGGAGATCAAACAGACGGAGAGCAGGATATGGCAGtgtatgATTTCGATGATGCAGAAGATGGTAATGTGGTTGATTCAGAGGACGAGGATGATAAATCtaaaattgtcaaaattctACCTAGAAAATCGCAGGTAGTTACTCAGGCACACATGTGTAATTATTGTAACTATACAAGTCCTAAAAGATATCTCCTATCGCGACATATGAAATCCCATTCTGAAGAACGCCCTCACAAGTGCAGCGTGTGCGAGAGAGGTTTTAAAACTTTAGCATCATTGCAGAATCATGTTAATACCCACACTGGGACAAAACCACATGCTTGTAAATATTGTGATGCTGCATTTACAACTTCAGgcgAATTGGTGCGACACGTAAGATATCGCCATACTCACGAAAAGCCACATAAATGTACGGAATGTGATTATGCCAGCGTGGAGTTGTCTAAATTGAAAAGGCACATTAGATGTCACACGGGGGAACGGCCCTATCAATGCCCACATTGCACTTATGCTAGTCCggatacttttaaattaaaacgccATTTAAGAATACATACAGGAGAGAAACCCTATCAATGTGATATTTGCCAAACTAGATTTACACAGTCTAATAGTTTGAAAGCCCACAAACTAACACATAACATTGGTGATAAACCAGTATTTCAATGTGAACTCTGTCCGACTACGTGCGGTCGTAAAACAGATTTAAGGATACACGTTCAAAAACTACACACATCAGATAAACCCCTCAAGTGTAAAAGATGTGGTAAATCATTTCCTGATAGATATAGTTACAAGTTACACAACAAATCGCACGAAGGTGAAAAATGCTACAAATGTGACCTTTGCCCATATGCTTCGATATCTGCCCGCCACTTAGAATCCCACATGTTAATCCACACGGATCAGAAACCATACCAGTGTGACCACTGTGATCAATCCTTCCGACAGAAACAGCTACTAAAGAGACACCAAAACCTTTACCACAATCCCGAGTATATCCCGCCACCACCTCGGGAAAAAACACATGAATGTCCTGAGTGCTCAAGGGCTTTTAGGCATAAAGGCAATCTCATCCGGCACATGGCCGCACATGATCCTGATCCTGTAATACAAAGGAAGCAGTTGGAATTGAAACTGGGCAGGCAGAAGAAGATTCAAATGATAGATGGACAGCAAGTAGAGGTTATGCCGGGCATTGGGTCAGATGAGGAGGAAGAAATCGATATGATGGCTGTGGAAGGTTCTGATGGCCAACAGTATGTTGTGCTGGAAGTTATTCAGTTGGCTGATGGTGAAGAACAGGCCATGGTTGTTGAGGAAGGTAATGAAGAGCTGCTAGGAGATAATTTATTGCATGATAGTGATTtgaatgatgatgatgatgtgCTGAAGGCATTGCAGTCTGCACAAAGAGTTGGTAAAGAAGAGCTGTCAGACGAGGAGGAACACGAAGAGAAGAAAGTATCTACTGCAAGAGATATGCAGAACTGTTTCGgatttgatgAGGAGGATGATGAAGAAGAAGGGATGAGGGCAGGAAAAGATTCAATTACGATTTTAGGAAATATTGACTGA
Protein Sequence
EDDGDGEEGTYFVDQAGHYYFQAKGDTQPVMTVMSGLGDSSGGDGEEYIINNENDGEEAEDGEETLQVQGGENNQILINSGNAYQRVTVVPADTNSGELSYVLIVQDPDMKDGDQTDGEQDMAVYDFDDAEDGNVVDSEDEDDKSKIVKILPRKSQVVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHACKYCDAAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYQCDICQTRFTQSNSLKAHKLTHNIGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHNKSHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCDQSFRQKQLLKRHQNLYHNPEYIPPPPREKTHECPECSRAFRHKGNLIRHMAAHDPDPVIQRKQLELKLGRQKKIQMIDGQQVEVMPGIGSDEEEEIDMMAVEGSDGQQYVVLEVIQLADGEEQAMVVEEGNEELLGDNLLHDSDLNDDDDVLKALQSAQRVGKEELSDEEEHEEKKVSTARDMQNCFGFDEEDDEEEGMRAGKDSITILGNID