Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014506.1:89483386-89502656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00017 0.013 17.3 2.5 1 23 247 269 247 269 0.98

2 11 0.00011 0.0081 18.0 1.8 1 23 275 297 275 297 0.98

3 11 7.7e-05 0.0059 18.4 1.0 3 23 305 326 303 326 0.94

4 11 0.017 1.3 11.0 3.5 1 21 332 352 332 354 0.95

5 11 0.00036 0.027 16.3 1.9 1 23 360 382 360 382 0.99

6 11 2.6e-05 0.002 19.9 0.7 1 23 388 410 388 410 0.98

7 11 0.00091 0.07 15.0 1.4 1 23 418 441 418 441 0.97

8 11 9.9e-05 0.0076 18.1 2.5 2 23 448 469 447 469 0.97

9 11 0.00048 0.037 15.9 0.3 1 23 475 497 475 497 0.98

10 11 9.5e-06 0.00073 21.3 2.0 1 23 503 526 503 526 0.96

11 11 1e-06 8e-05 24.3 2.9 1 23 540 562 540 562 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00017	0.013	17.3	2.5	1	23	247	269	247	269	0.98
2	11	0.00011	0.0081	18.0	1.8	1	23	275	297	275	297	0.98
3	11	7.7e-05	0.0059	18.4	1.0	3	23	305	326	303	326	0.94
4	11	0.017	1.3	11.0	3.5	1	21	332	352	332	354	0.95
5	11	0.00036	0.027	16.3	1.9	1	23	360	382	360	382	0.99
6	11	2.6e-05	0.002	19.9	0.7	1	23	388	410	388	410	0.98
7	11	0.00091	0.07	15.0	1.4	1	23	418	441	418	441	0.97
8	11	9.9e-05	0.0076	18.1	2.5	2	23	448	469	447	469	0.97
9	11	0.00048	0.037	15.9	0.3	1	23	475	497	475	497	0.98
10	11	9.5e-06	0.00073	21.3	2.0	1	23	503	526	503	526	0.96
11	11	1e-06	8e-05	24.3	2.9	1	23	540	562	540	562	0.97

Sequence Information

Coding Sequence: ATGCGCAGTGCGGCTGTGCAGTTGCCAGTTGTCGTTTGTAACAACGCTGGCTTCGCCATCTCTGGTTCATTGCGACAGACGCTACCCGTTACGATACGCCCTCTTCAAGCAATCACAAGGATGTCTGCACAGTTCACCCCCGAGATAAAGTTGGAGGGTGTGGACCCATCCGAGAATGTCACGGAGATACAATCGTACCTCGAAGGGTTTCAGAAGGAGATTCAAAGCACCGATAATTCAACACAACAAGTCACCGAAATTGAAGACGATGCAGACGGTGACGAAGGAACGTACTTCGTCGATCAAGCAGGCCATTATTATTACCAAGCGAAAGGTGAAACTCAACCAGTAATGACGATGGTTTCTGGCATAAATGATTCTGAAGGCGGAGATGCAGAGGAATTCATCATTAATCATGAAAATGACGACGATGGAGATGATGACGTGGAAGAAGGTTTGCCAGATGGTGCAAATAATCAAATCGTCATCAATAATGGGAGTGCTTACCAAAGAATCACGGTTGTTCCCGCAGATGCTAGCTCAAACGAGCTCAGCTACGTGCTTATTGTTCAACAACCCGATGATAAGGAGGGGGAACAGACGGACGGAGATCAAGATTTGACTGTGTATGATTTCGATGAGACGGAAGAAGGAAATGTTGTTGACTCAGAAGCCGAAGATGACAAGTCGAAAATTGTTAAGATCCTGCCGAGGCGATCGCAGGTTGTCTCGCAGCCCTACATGTGCAATTATTGCAATTACACGAGTCCGAAGCGGTACCTGCTGTCGCGACACATGAAGTCGCACTCCGAGGAGAGGCCGCACAAGTGTCGCGTGTGCGAACGGGGCTTCAAGACATTGGCCTCGTTGCAGAATCACGTCAACACTCATACCGGGACGAAGCCTCATCTCTGTAAATATTGCGATGCTGCCTTCACTACATCAGGTGAATTGGTAAGGCATGTCAGATACCGACACACGCACGAGAAACCGCACAAGTGCAACGAGTGCGATTACGCCAGCGTCGAGCTCTCGAAACTGAAGAGGCACATCCGATGCCACACGGGCGAACGCCCGTACCAGTGCCCGCACTGCACCTACGCCAGCCCGGACACGTTCAAGCTGAAGCGCCACCTGCGGATTCACACGGGCGAGAAGCCGTACGAGTGCGACGAGTGTCAGGCACGATTCACGCAGTCGAATAGTCTGAAGGCGCACAAGCTGACGCACAGCATCGGCGACAAGCCCGTGTTCCAGTGCGAACTCTGCCCGACGACGTGCGGGCGGAAGACCGACCTGAGGATACACGTGCAGAAACTGCACACTTCGGATAAACCGCTGAAGTGCAAGCGGTGTGGGAAGTCGTTTCCGGATAGGTATAGTTATAAGTTACACAACAAGACACACGAGGGTGAGAAGTGCTTCAAGTGCGACTTGTGTCCGTACGCATCCATTTCGGCTAGGCATCTCGAGTCGCACATGCTCATACATACCGACCAGAAGCCATTCCAGTGTGACCAGTGCGACCAATCGTTCCGCCAGAAACAGTTGCTTAAGCGCCATGTTAACCTCTATCACAACCCTACTTACGTACCACCAGCACCCAGAGAGAAGAATCACGAATGTCCGGAGTGCCACAGGGCTTTCAGGCACCGGGGGAACCTCATAAGGCATATGGCCGTTCACGACCCCGAGTCGAGCATACAGGAGAAGCAGCTGGCCCTGAAGCTCGGCAGGCAGAAGAAGATCCAGATGATCGACGGGCAGCAGGTGGAGGTGATGCCCTCGCTTGGCTCGGACGACGAGGACGCGGACATGATGGCCATGGAGGGTTCTGATGGTCAACAGTATGTTGTGTTAGAGGTTATACAGCTGGCTGATGGCGAGGAACAAGCGATGGTCGTAGAGGGTCAGAGTGAGATGCTCGGGGAGGGTATGCTGCATGAACACGATTTGCATGATGAGGATGTATTAAAAGCGCTGCAATCAGCTAGGAGGATGGCAGCAGTGCAACAGCATGACGATGATGAGGATGATGAAGAAGATGAAAAGCCAAAGAAAATAGAAGTTGATCATGATATGGACACTTGCTTCGGATTTGACGAGGACGAAGATGAAGACGATGATATTCGGCATGGGAAAGAAACGATAACCCTTCTAGGGATGGACTGA
Protein Sequence: MRSAAVQLPVVVCNNAGFAISGSLRQTLPVTIRPLQAITRMSAQFTPEIKLEGVDPSENVTEIQSYLEGFQKEIQSTDNSTQQVTEIEDDADGDEGTYFVDQAGHYYYQAKGETQPVMTMVSGINDSEGGDAEEFIINHENDDDGDDDVEEGLPDGANNQIVINNGSAYQRITVVPADASSNELSYVLIVQQPDDKEGEQTDGDQDLTVYDFDETEEGNVVDSEAEDDKSKIVKILPRRSQVVSQPYMCNYCNYTSPKRYLLSRHMKSHSEERPHKCRVCERGFKTLASLQNHVNTHTGTKPHLCKYCDAAFTTSGELVRHVRYRHTHEKPHKCNECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDECQARFTQSNSLKAHKLTHSIGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHNKTHEGEKCFKCDLCPYASISARHLESHMLIHTDQKPFQCDQCDQSFRQKQLLKRHVNLYHNPTYVPPAPREKNHECPECHRAFRHRGNLIRHMAVHDPESSIQEKQLALKLGRQKKIQMIDGQQVEVMPSLGSDDEDADMMAMEGSDGQQYVVLEVIQLADGEEQAMVVEGQSEMLGEGMLHEHDLHDEDVLKALQSARRMAAVQQHDDDEDDEEDEKPKKIEVDHDMDTCFGFDEDEDEDDDIRHGKETITLLGMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01013609;
90% Identity: iTF_00137262;
80% Identity: -