Basic Information

Insect: Cynegetis impunctata
Gene Symbol: -
Assembly: GCA_030704885.1
Location: JARQZK010000755.1:300187-315563[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00027 0.082 15.6 5.2 1 23 200 222 200 222 0.97

2 11 1.8e-05 0.0054 19.3 1.0 1 23 228 250 228 250 0.98

3 11 0.00012 0.035 16.7 0.3 3 23 258 279 257 279 0.98

4 11 0.0068 2.1 11.2 3.0 1 21 285 305 285 307 0.95

5 11 0.00013 0.039 16.6 1.9 1 23 313 335 313 335 0.99

6 11 1.7e-05 0.0051 19.3 1.0 1 23 341 363 341 363 0.99

7 11 0.00068 0.2 14.3 0.8 1 23 371 394 371 394 0.97

8 11 2.9e-05 0.0086 18.6 2.8 2 23 401 422 400 422 0.97

9 11 0.00013 0.039 16.6 0.3 1 23 428 450 428 450 0.99

10 11 9.1e-06 0.0027 20.2 2.9 1 23 456 479 456 479 0.96

11 11 5e-07 0.00015 24.2 1.1 1 23 493 515 493 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00027	0.082	15.6	5.2	1	23	200	222	200	222	0.97
2	11	1.8e-05	0.0054	19.3	1.0	1	23	228	250	228	250	0.98
3	11	0.00012	0.035	16.7	0.3	3	23	258	279	257	279	0.98
4	11	0.0068	2.1	11.2	3.0	1	21	285	305	285	307	0.95
5	11	0.00013	0.039	16.6	1.9	1	23	313	335	313	335	0.99
6	11	1.7e-05	0.0051	19.3	1.0	1	23	341	363	341	363	0.99
7	11	0.00068	0.2	14.3	0.8	1	23	371	394	371	394	0.97
8	11	2.9e-05	0.0086	18.6	2.8	2	23	401	422	400	422	0.97
9	11	0.00013	0.039	16.6	0.3	1	23	428	450	428	450	0.99
10	11	9.1e-06	0.0027	20.2	2.9	1	23	456	479	456	479	0.96
11	11	5e-07	0.00015	24.2	1.1	1	23	493	515	493	515	0.96

Sequence Information

Coding Sequence: ATGTCTGCACAGTTTAATGCAAACAATATTAAATTGGAAGATCCAAGCGAAAATGTCACGGAAATTCAGTCATATTTGGCTGgatttcaaaaagaaattgGCTCTGATGTAACAATCCAACAGGTGTCGGATGAAACAGAAGTTGATGGAGAAGAGGGAACATATTTTGTTGATCAAGCAGGTCATTACTATTTTCAAGCGAAAGGGGATTCCCAACCTGTTATGACAGTTGTATCAACTTCAGGTTTATCCCAGGAGAAAGATGCTCAGGAATTTATCATCAACGCAGAAGATGATGCGGAGGAAGTTGAGGCTGAGGAGGCCGAAACAGgagataatattattataaatacagGAAATGCTTACCAGCGGGTATCTCTTGTCCAATCTGATGCAAATTCTGGGGAATTGAGTTATGTGTTGATAGTTCAGGATCCTGCTGATTTGAAGGATGGTGAAACAGATGGAGATCAAGATATGGCTGTTTATGATTTCGATGATGCTGAAGATGGTGGCACCATAGATTCCGATATTGAAGATGACAAATCGAAAATAGTCAAAATCGTCCCTCGTAAATCTCAGGTTGTAACTCAGGCACACATGTGTAACTACTGTAACTACACCAGCTCTAAAAGATACCTACTCTCTAGGCATATGAAGTCTCATTCTGAAGAGAGGCCACACAAATGCGGCGTGTGCGAGAGGGGTTTTAAAACGTTAGCTTCTCTGCAGAATCATGTGAATACTCATACAGGGACTAAACCTCACGGATGCAAATTTTGTCAGGCCGCTTTTACTACATCAGGTGAACTGGTGCGACATATAAGATATCGTCATACTCATGAGAAACCACACAAATGCGACGAATGCGATTATGCTAGTGTAGAACTGTCCAAATTAAAGAGGCATATTCGTTGTCATACAGGAGAAAGACCTTACCAGTGTCCCCATTGCACTTACGCTAGTCCCGATACCTTCAAACTGAAACGTCATCTTAGGATTCACACTGGAGAGAAGCCATACGAATGTGACCAGTGTACGGCCAAGTTTACTCAGTCCAACAGCTTGAAGGCTCATAGATTGACCCACAATGTTGGCGAAAAACCAGTGTTTCAATGCGAACTGTGTCCAGCAACATGCGGTAGGAAAACCGATCTTCGCATCCACGTGCAGAAACTGCACACTTCGGACGTTCCACTAAAGTGTAAGAGATGTGGAAAATCTTTCCCGGATAGGTATAGTTTCAAACTCCACAATAAAACTCACGACGGGGAAAAATGCTACAAGTGCGACCTGTGTCCCTATGCTTCCATCTCCGCCCGTCATCTGGAGTCTCACATGCTGATACATACGGACCAAAAACCGTTCCAATGCATGCAGTGCGATCAGTCGTTCAGGCAGAAGCAACTTCTCAAACGGCACCAAAATCTATATCATAATCCCGACTATATTCCGCCTCAACCCAGGGAGAAGACTCACGAATGTCCAGAGTGTTCCCGTGCCTTCCGTCATAAAGGCAACCTAATCAGGCATATGGCCGCACACGATCCTGACCCGACCATTCAGCGAAAACAACTCGAACTCAAACTGGGTCGACAGAAGAAGATCCAGATGATAGATGGACAGCAGGTGGAGGTGATGCCCAACATGGGCTCTGAGGACGAGGACGAGGAAGACGAAGAAGAGGAAATCGACATGATGGCGGTAGAGGGGTCGGACGGACAGCAGTACGTGGTACTGGAAGTGATACAGCTTGGCGATGGCGAAGAACAGGCAATGGTCGTTGGAGACAGCTCGGCTGAGCTGGTTGGAGGAAGCATATTGCCGGACAACGGTGAGTGCAGTAATTGA
Protein Sequence: MSAQFNANNIKLEDPSENVTEIQSYLAGFQKEIGSDVTIQQVSDETEVDGEEGTYFVDQAGHYYFQAKGDSQPVMTVVSTSGLSQEKDAQEFIINAEDDAEEVEAEEAETGDNIIINTGNAYQRVSLVQSDANSGELSYVLIVQDPADLKDGETDGDQDMAVYDFDDAEDGGTIDSDIEDDKSKIVKIVPRKSQVVTQAHMCNYCNYTSSKRYLLSRHMKSHSEERPHKCGVCERGFKTLASLQNHVNTHTGTKPHGCKFCQAAFTTSGELVRHIRYRHTHEKPHKCDECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDQCTAKFTQSNSLKAHRLTHNVGEKPVFQCELCPATCGRKTDLRIHVQKLHTSDVPLKCKRCGKSFPDRYSFKLHNKTHDGEKCYKCDLCPYASISARHLESHMLIHTDQKPFQCMQCDQSFRQKQLLKRHQNLYHNPDYIPPQPREKTHECPECSRAFRHKGNLIRHMAAHDPDPTIQRKQLELKLGRQKKIQMIDGQQVEVMPNMGSEDEDEEDEEEEIDMMAVEGSDGQQYVVLEVIQLGDGEEQAMVVGDSSAELVGGSILPDNGECSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01013609;
90% Identity: iTF_00394741;
80% Identity: -