Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021708.1:17227065-17233186[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00044 0.068 14.8 4.1 1 23 205 227 205 227 0.97

2 11 1.4e-05 0.0021 19.6 1.5 1 23 233 255 233 255 0.98

3 11 6.3e-05 0.0097 17.5 0.8 1 23 261 284 261 284 0.95

4 11 0.0084 1.3 10.8 3.5 1 21 290 310 290 312 0.95

5 11 0.00014 0.021 16.4 1.9 1 23 318 340 318 340 0.99

6 11 3.8e-06 0.00058 21.3 1.2 1 23 346 368 346 368 0.98

7 11 0.00036 0.055 15.1 1.5 1 23 376 399 376 399 0.97

8 11 7.9e-05 0.012 17.1 2.4 2 23 406 427 405 427 0.96

9 11 0.00014 0.021 16.4 0.3 1 23 433 455 433 455 0.99

10 11 2e-06 0.0003 22.2 2.7 1 23 461 484 461 484 0.96

11 11 1.3e-06 0.0002 22.8 2.2 1 23 498 520 498 520 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00044	0.068	14.8	4.1	1	23	205	227	205	227	0.97
2	11	1.4e-05	0.0021	19.6	1.5	1	23	233	255	233	255	0.98
3	11	6.3e-05	0.0097	17.5	0.8	1	23	261	284	261	284	0.95
4	11	0.0084	1.3	10.8	3.5	1	21	290	310	290	312	0.95
5	11	0.00014	0.021	16.4	1.9	1	23	318	340	318	340	0.99
6	11	3.8e-06	0.00058	21.3	1.2	1	23	346	368	346	368	0.98
7	11	0.00036	0.055	15.1	1.5	1	23	376	399	376	399	0.97
8	11	7.9e-05	0.012	17.1	2.4	2	23	406	427	405	427	0.96
9	11	0.00014	0.021	16.4	0.3	1	23	433	455	433	455	0.99
10	11	2e-06	0.0003	22.2	2.7	1	23	461	484	461	484	0.96
11	11	1.3e-06	0.0002	22.8	2.2	1	23	498	520	498	520	0.95

Sequence Information

Coding Sequence: ATGGGTACATTTACAGAAGCTCCAACTATTAAGTTGGAGGAAACTACGGAAAATGTTACAGAAATTCAATCATACTTAGCAGGCTTTCAAAAAGAAATTGTAGACTCAACAATTCATCCCAGCACAGgaAATGATGAAAATGATGCAGAAAATGAACAAGAAGAAGGTACTTACTTTGTAGACCAAGCTGGACATTATTATTTCCAAGCAAAAGGTCAAAGTCAACCAGTAATGACTGTAATGCCAGCAATAACATCTGCTGATGATCCTGGAGAATTTGTGATTAGTCAGGATAATGATGAAGGGGATGAAGGAGATGAGCCAATTATTGAAGAATCAGACAACAATCAGATCCTGATTAACTCTGGAAATGCTTACCAACGAGTCACTGTTGTACCAGCTGACAACAATACTGGAGAATTAAGTTATGTACTGATTGTTCAGGATCCATCAGATATTAAAGATGGCGAACAAAGTGATGGGGAACAAGACATGGCTGTTTACGATTTTGATGACGCTGAAGATGGTGGAATGATGGATTCCGATGCAGAAGACGACAAAAGCAAAATAGTAAAACTCATTCCTAGAAAATCACAAGTTGTTGCGCAAGCTCACATGTGCAACTATTGCAATTACACAAGCCCCAAACGCTACCTCCTTTCCAGACACATGAAATCCCATTCCGAAGAACGACCACACAAATGTAGTGTGTGCGAAAGAGGCTTTAAGACTCTAGCTTCCTTGCAAAATCACGTTAACACCCATACTGGTACCAAACCTCATGCGTGTAAATTCTGTGATGCCGCTTTTACAACATCAGGAGAATTAGTTCGTCACGTCAGATACCGTCACACACACGAAAAACCCCACAAATGTACAGAATGTGATTACGCCAGCGTTGAATTGTCCAAGTTGAAAAGACATATTCGATGTCATACTGGAGAAAGACCTTATCAATGCCCGCATTGCACCTACGCCAGTCCTGATACATTCAAACTCAAAAGACATCTGAGAATACATACTGGAGAGAAACCATACGAATGTGACATCTGTCAAACAAGATTTACACAGTCCAACAGTCTTAAGGCGCATAAACTTACGCATAACATTGGTGATAAACCGGTTTTTCAATGCGACTTGTGTCCTACGACGTGTGGTCGTAAAACAGATCTTCGTATTCACGTTCAAAAGCTGCATACTTCGGATAAACCTCTTAAATGTAAGAGATGTGGGAAGTCATTTCCAGATAGGTACAGTTATAAGCTTCACAACAAATCCCACGAAGGCGAAAAATGCTACAAATGCGACTTGTGTCCGTATGCTTCCATATCGGCCCGTCACCTCGAATCGCACATGCTTATACATACAGATCAGAAGCCGTTTCAATGCGACCAATGCGATCAATCTTTTCGCCAGAAACAACTTTTGAAACGCCATCAAAACCTTTACCATAATCCTCACTACGTCCCACCACCGCCTCGAGAAAAAACCCACGAGTGTCCCGAGTGCACCAGAGCGTTCAGACACAAAGGAAATCTCATCAGACACATGGCATTTCACGATCCGGATCCTACTATACAAAAGAAACAGCTGGAATTGAAATTGGGCCGGCAAAAGAAAATACAAATGATTGACGGACAACAGgTTGAAGTGGTACAAGGAATGGGTTCGGACGAAGAGGAGGAGATTGATATGATGGCTGTGGAAGGTTCAGACGGTCAACAGTATGTTGTTTTGGAGGTGATTCAGTTGGCTGATGGCGAAGAACAAACCATGGTGGTTGGGGATGGTACTGGGGAATTGTTGAGCGAAACTATTTTACCTGATCATGATCTGAACGATGAGGAAGTAATGAAGGCGTTACAGTCGGCAAGGCGAGTTGCCAAACAAGAAATAGAAGATGAAGAAGAACTGGAGGAGAAAAAAGTTGCCACTGACATGCAGAACTGTTTTGGGTTCGACGACGAAGAAGACGACGACGAAGATGGTGTGAGAGGCGGAAAAGACAGTATCACTCTTCTTGATAGCATTCATTAG
Protein Sequence: MGTFTEAPTIKLEETTENVTEIQSYLAGFQKEIVDSTIHPSTGNDENDAENEQEEGTYFVDQAGHYYFQAKGQSQPVMTVMPAITSADDPGEFVISQDNDEGDEGDEPIIEESDNNQILINSGNAYQRVTVVPADNNTGELSYVLIVQDPSDIKDGEQSDGEQDMAVYDFDDAEDGGMMDSDAEDDKSKIVKLIPRKSQVVAQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHACKFCDAAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICQTRFTQSNSLKAHKLTHNIGDKPVFQCDLCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHNKSHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPFQCDQCDQSFRQKQLLKRHQNLYHNPHYVPPPPREKTHECPECTRAFRHKGNLIRHMAFHDPDPTIQKKQLELKLGRQKKIQMIDGQQVEVVQGMGSDEEEEIDMMAVEGSDGQQYVVLEVIQLADGEEQTMVVGDGTGELLSETILPDHDLNDEEVMKALQSARRVAKQEIEDEEELEEKKVATDMQNCFGFDDEEDDDEDGVRGGKDSITLLDSIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01013609;
90% Identity: iTF_00911329;
80% Identity: -