Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293419.1:51128991-51150216[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00069 0.12 14.8 4.1 1 23 204 226 204 226 0.97

2 11 6.3e-05 0.011 18.1 1.8 1 23 232 254 232 254 0.98

3 11 5.2e-05 0.0091 18.3 1.2 1 23 260 283 260 283 0.96

4 11 0.013 2.3 10.8 3.5 1 21 289 309 289 311 0.95

5 11 0.00021 0.037 16.4 1.9 1 23 317 339 317 339 0.99

6 11 1.1e-05 0.002 20.4 1.2 1 23 345 367 345 367 0.98

7 11 0.00054 0.094 15.1 1.4 1 23 375 398 375 398 0.97

8 11 0.00012 0.021 17.2 2.4 2 23 405 426 404 426 0.96

9 11 0.0005 0.086 15.3 0.2 1 23 432 454 432 454 0.98

10 11 3.4e-06 0.00059 22.1 2.7 1 23 460 483 460 483 0.96

11 11 8.1e-07 0.00014 24.0 1.2 1 23 497 519 497 519 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00069	0.12	14.8	4.1	1	23	204	226	204	226	0.97
2	11	6.3e-05	0.011	18.1	1.8	1	23	232	254	232	254	0.98
3	11	5.2e-05	0.0091	18.3	1.2	1	23	260	283	260	283	0.96
4	11	0.013	2.3	10.8	3.5	1	21	289	309	289	311	0.95
5	11	0.00021	0.037	16.4	1.9	1	23	317	339	317	339	0.99
6	11	1.1e-05	0.002	20.4	1.2	1	23	345	367	345	367	0.98
7	11	0.00054	0.094	15.1	1.4	1	23	375	398	375	398	0.97
8	11	0.00012	0.021	17.2	2.4	2	23	405	426	404	426	0.96
9	11	0.0005	0.086	15.3	0.2	1	23	432	454	432	454	0.98
10	11	3.4e-06	0.00059	22.1	2.7	1	23	460	483	460	483	0.96
11	11	8.1e-07	0.00014	24.0	1.2	1	23	497	519	497	519	0.96

Sequence Information

Coding Sequence: ATGAGTACACAGTTTACCGAAGGTACCACCATCAAACTTGAGGAAACCTCTGAAAATGTTACTGAAATTCAATCCTATCTGGCAGGTTTTCAAAAGGAAATAGGAGACTCTGGGACACAACAAATATCAGCTGATGATCATGAAGTTGGAAATGAGGAAGGGACGTATTTTGTTGACCAAGCCGGCCATTACTATTTCCAAGCCAAAGGTGGTGGCACACCCGTAATGACGGTTATGCCATCGATAGACAGCTCAGGTGGAGAAGGAGAGGAATACATCATCAACCATGAGAATGATGAAGATGTTGAAGAAGGGGATGAGgctACTATTCAACAAggggaaaataatcaaatcctCATCAATTCTGGAAATGCTTATCAAAGAGTCACAGTCGTTCCGTCGGACAACAATTCCGGAGAGCTTAGCTATGTTCTCATAGTGCAAGACCCTGATATCAGAGATGAAGATCAAACGGATGGTGAACAAGATATGGCAGTGTATGACTTCGATGATGCCGAAGAAGAAGGTGAGCCGGAATCAGACGTTGAAGATGATAAGAGTAAAATAGTCAAAATAATACCTAGGAAATCACAAGTGGTCACCCAAGCTCACATGTGTAATTACTGCAATTACACTAGTCCAAAACGTTATCTGTTATCTAGACATATGAAGTCTCATTCGGAAGAACGTCCCCACAAGTGCCGAGTGTGCGAAAGGGGGTTCAAAACTTTGGCATCTTTACAAAATCATGTGAATACACACACTGGAACAAAGCCACATTCTTGCAAATATTGTGAAGCCGCTTTCACAACTTCAGgggAACTTGTACGTCACGTGAGGTATCGACATACCCATGAAAAACCTCACAAGTGCACAGAATGTGACTATGCAAGCGTTGAACTGTCGAAACTGAAGAGGCACATTCGGTGCCACACCGGGGAGAGACCCTATCAGTGCCCTCACTGTACTTACGCCAGCCCCGATACGTTCAAACTCAAACGCCATTTGAGGATTCACACGGGAGAGAAACCTTACAAGTGCGACATTTGCTCAACTAGGTTCACGCAGTCGAACAGTCTCAAGGCTCATAAATTGATACATAACAttggagaTAAGCCTATATTTCAGTGTGAACTTTGTCCAACAACATGTGGCCGTAAAACTGACTTGAGAATCCATGTACAGAAACTACATACATCTGATAAACCTCTCAAATGTAAAAGATGTGGAAAATCGTTTCCAGATAGGTATAGTTACAAGTTACACAATAAATCTCACGAAGGCGAAAAGTGCTACAAGTGCGATTTATGTCCGTACGCTTCAATCTCCGCTCGTCACTTGGAGTCCCACATATTAATCCACACGGACGAGAAGCCCTACAGATGCGACAATTGCGACCAATCGTTTCGCCAAAAACAATTGCTGAAGAGGCACCAGAACCTCTACCATAATCCTGATTACATACCTCCTCCGCCTAAAGAAAAGACTCACGAGTGTCCCGAGTGTACCAGAGCGTTCAGACACAAAGGAAACTTGATAAGgcATATGGCAGCTCACGATCCCGACCCAACCATACAGCGGAAACAGCTCGAACTGAAGATGGGCAGACAAAAAAAGATCCAAATGATAGACGGTCAGCAGGTTGAGGTTATGCCAGGAATCGGATCAGAGGACGAAGAAGAGATCGACATGATGGCTGTGGAAGGTTCTGACGGACAGCAGTATGTTGTCTTGGAGGTAATTCAACTCGATGGGGAGGAACAGGCGATGGTTGTTGGCGACGGAGCTGGTGAATTGCTCAGTGAGAGCATTTTACCTGATCATGatTTGGATGATGAAGATGTTCTCAAAGCCTTACAGTCTGCTAGGAAAATAACCAAGCAGGAGCTCCCAGATGAAGATGAGGAAGATGAGAAGAAAGTTGATCCTTCTGACATGCAAAACTGCTTCGGCTTCGATgATGAGGAGGAGGACGAGGAAGAAGCGAGACCAAGGAAAGAAACCATTACGCTTCTAGGTAACATTGATTAA
Protein Sequence: MSTQFTEGTTIKLEETSENVTEIQSYLAGFQKEIGDSGTQQISADDHEVGNEEGTYFVDQAGHYYFQAKGGGTPVMTVMPSIDSSGGEGEEYIINHENDEDVEEGDEATIQQGENNQILINSGNAYQRVTVVPSDNNSGELSYVLIVQDPDIRDEDQTDGEQDMAVYDFDDAEEEGEPESDVEDDKSKIVKIIPRKSQVVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCRVCERGFKTLASLQNHVNTHTGTKPHSCKYCEAAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYKCDICSTRFTQSNSLKAHKLIHNIGDKPIFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHNKSHEGEKCYKCDLCPYASISARHLESHILIHTDEKPYRCDNCDQSFRQKQLLKRHQNLYHNPDYIPPPPKEKTHECPECTRAFRHKGNLIRHMAAHDPDPTIQRKQLELKMGRQKKIQMIDGQQVEVMPGIGSEDEEEIDMMAVEGSDGQQYVVLEVIQLDGEEQAMVVGDGAGELLSESILPDHDLDDEDVLKALQSARKITKQELPDEDEEDEKKVDPSDMQNCFGFDDEEEDEEEARPRKETITLLGNID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01013609;
90% Identity: iTF_00329924;
80% Identity: -