Lqua009845.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptura quadrifasciata
Gene Symbol
-
Assembly
GCA_963675555.1
Location
OY776673.1:169506215-169538638[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00054 0.1 15.2 4.1 1 23 46 68 46 68 0.97
2 11 1.7e-05 0.0031 20.0 1.5 1 23 74 96 74 96 0.98
3 11 0.00027 0.05 16.2 0.8 1 23 102 125 102 125 0.95
4 11 0.01 1.9 11.2 3.5 1 21 131 151 131 153 0.95
5 11 0.00017 0.031 16.8 1.9 1 23 159 181 159 181 0.99
6 11 4.1e-07 7.7e-05 25.0 1.1 1 23 187 209 187 209 0.99
7 11 0.00043 0.079 15.6 1.4 1 23 217 240 217 240 0.97
8 11 9.7e-05 0.018 17.6 2.4 2 23 247 268 246 268 0.96
9 11 0.00017 0.031 16.8 0.3 1 23 274 296 274 296 0.99
10 11 2.1e-06 0.00039 22.8 4.5 1 23 302 325 302 325 0.97
11 11 2.2e-06 0.0004 22.8 0.7 1 23 339 361 339 361 0.96

Sequence Information

Coding Sequence
ATGATATTAATTTTCTTTCCAGTGTACGACTTTGATGAAGCAGAGGAGGGAGGCATAGTTGACTCTGAAGCTGAAGATGACAAATCCAAAATTGTTAAGATTTTACCCCGCAAGTCACAAGTAGTCACCCAAGCACATATGTGTAATTACTGTAATTATACCAGCCCCAAAAGGTACCTCCTGTCGCGGCACATGAAATCTCACTCTGAAGAGCGTCCACATAAATGTAGTGTTTGCGAGAGGGGCTTCAAGACATTGGCTTCATTGCAGAATCACGTTAATACACACACTGGAACTAAGCCGCACGCATGCAAATTTTGCGAAGCAGCCTTTACAACGTCAGgTGAATTGGTTCGCCACGTCAGGTATCGTCATACTCATGAAAAGCCACATAAATGTACTGAATGTGATTATGCAAGTGTCGAGCTCTCAAAATTGAAACGACATATTCGCTGTCATACTGGAGAAAGGCCTTACCAATGTCCGCATTGTACATATGCCAGCCCTGACACCTTTAAATTGAAACGCCATTTACGAATACATACTGGGGAGAAACCCTACCAGTGTGAAGTTTGCCAAACTAGATTTACACAGTCAAACAGCTTGAAGGCTCACATGCTAACACATAACATTGGTGATAAGCCCATATTCCAATGTGAACTTTGTCCGACTACATGTGGACGCAAGACAGACTTGAGGATACATGTGCAGAAGTTACATACATCTGATAAACCTTTAAAATGCAAAAGATGTGGAAAATCTTTTCCAGATCGATATAGCTACAAACTACACAATAAATCACACGAAGGGGAGAAGTGCTATAAATGTGATCTATGCCCCTACGCCTCTATATCAGCCCGCCACCTAGAATCCCATATGTTAATTCACACTGACCAAAAGCCATACCAGTGTGACCATTGTGATCAGTCGTTTCGTCAAAAACAACTCTTGAAGCGGCACCAGAACCTGTATCATAACCCTGAATATGTCCCACCACCGCCTAGAGAAAAAACCCACGAATGTCCAGAATGCGCTCGTGCCTTCAGACACAAAGGTAACCTTATCCGACATATGGCCGCCCACGATCCCGATCCCACGATTCAAAGAAAGCAATTGGAATTGAAACTAGGTAGGCAAAAAAAGATTCAAATGATCGATGGACAACAGGTAGAGGTTATGCCGGGAATCGGATCAGATGAAGAAGAAGAGATTGATATGATGGCTGTAGAAGGTTCTGATGGTCAGCAGTATGTTGTACTTGAGGTTATTCAGCTGGCTGATGGCGAAGAACAAGCAATGGTTGTTGGAGACGGTGCTGGTGAATTACTAGGAGACAGTATCTTGCCTGACAGTGATCTAAATGATGAGGATGTTCTTAAAGCGCTGCAGTCTGCCAGAAGAGTTGCTAAAGAGGAATTACCTGATGAAGATGAAcaagaagaaaagaaaataatctCAACAGCCACAGATATGCAGAATTGTTTTGGATTCGATGACGATGAAGAAGATGATGAGGAGGGGATGAGAGCTGGCAAAGAAACCATTACGCTTTTAGGTGGCATTGactga
Protein Sequence
MILIFFPVYDFDEAEEGGIVDSEAEDDKSKIVKILPRKSQVVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHACKFCEAAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYQCEVCQTRFTQSNSLKAHMLTHNIGDKPIFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHNKSHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCDQSFRQKQLLKRHQNLYHNPEYVPPPPREKTHECPECARAFRHKGNLIRHMAAHDPDPTIQRKQLELKLGRQKKIQMIDGQQVEVMPGIGSDEEEEIDMMAVEGSDGQQYVVLEVIQLADGEEQAMVVGDGAGELLGDSILPDSDLNDEDVLKALQSARRVAKEELPDEDEQEEKKIISTATDMQNCFGFDDDEEDDEEGMRAGKETITLLGGID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01013609;
90% Identity
iTF_01013609;
80% Identity
-