Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065420.1:23437674-23442679[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00079 0.087 14.8 4.1 1 23 213 235 213 235 0.97

2 11 2.4e-05 0.0027 19.6 1.5 1 23 241 263 241 263 0.98

3 11 5.3e-05 0.0058 18.5 1.0 3 23 271 292 269 292 0.94

4 11 0.012 1.3 11.1 3.5 1 21 298 318 298 320 0.95

5 11 0.00024 0.027 16.4 1.9 1 23 326 348 326 348 0.99

6 11 1.6e-05 0.0018 20.1 1.9 1 23 354 376 354 376 0.98

7 11 0.00062 0.069 15.1 1.4 1 23 384 407 384 407 0.97

8 11 6.8e-05 0.0075 18.1 2.5 2 23 414 435 413 435 0.97

9 11 0.00033 0.037 16.0 0.3 1 23 441 463 441 463 0.98

10 11 2.1e-06 0.00023 22.9 2.0 1 23 469 492 469 492 0.96

11 11 4.7e-07 5.2e-05 25.0 3.0 1 23 506 528 506 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00079	0.087	14.8	4.1	1	23	213	235	213	235	0.97
2	11	2.4e-05	0.0027	19.6	1.5	1	23	241	263	241	263	0.98
3	11	5.3e-05	0.0058	18.5	1.0	3	23	271	292	269	292	0.94
4	11	0.012	1.3	11.1	3.5	1	21	298	318	298	320	0.95
5	11	0.00024	0.027	16.4	1.9	1	23	326	348	326	348	0.99
6	11	1.6e-05	0.0018	20.1	1.9	1	23	354	376	354	376	0.98
7	11	0.00062	0.069	15.1	1.4	1	23	384	407	384	407	0.97
8	11	6.8e-05	0.0075	18.1	2.5	2	23	414	435	413	435	0.97
9	11	0.00033	0.037	16.0	0.3	1	23	441	463	441	463	0.98
10	11	2.1e-06	0.00023	22.9	2.0	1	23	469	492	469	492	0.96
11	11	4.7e-07	5.2e-05	25.0	3.0	1	23	506	528	506	528	0.97

Sequence Information

Coding Sequence: ATGACTGCACAGTTCTCTGCGACACCGATCAAGCTGGAGGGTGTAGACCCTTCGGAGAACGTTACAGAAATACAATCTTACTTGGAGGGCTTTCAAAAGGAAATCGAAGGAGCTGATGGAACGATCCAACAAGTGGCTGAAATTGAGGGGGACGATAATGACGGTGACGGTGAAGAAGGCACCTACTTTGTTGACCAAGCAGGACATTACTACTACCAAGCGAAAGGTGAATCGACACCGGTCATGACCATGGTGTCTGGAATTAATGATGCAGAAGCTGGTGAAACGGAAGAATTCataataaatcaagaaaatgaTGAGGAAGGTGTGGAAGAAGATGCTGAAGAGGGATTACCCAGTGAAGGAGGGAATAATCAAATTCTTATAAATAATGGTAATGCGTACCAAAGAATCACCGTTGTTCCCGCAGACACAAGTTCCAATGAACTTAGCTATGTACTTATTGTACAACAGCCCGATGATAAGGAAGGAGAACAAACTGATGGTGATCAAGATATGACTGTTTATGACTTTGATGAAACCGAGGAAGGTGGAGTGATAGATTCAGAGGCAGAAGACGATAAATCCAAGATAGTAAAGATTATTCCTCGGAAAACCCAAGTGATAGCTCAAGCTCACATGTGCAATTATTGCAATTACACAAGTCCCAAACGTTACCTTCTATCTCGGCATATGAAATCCCACTCGGAGGAGCGCCCTCATAAATGCAGCGTTTGTGAGCGTGGTTTTAAAACACTCGCATCGCTGCAGAACCACGTCAACACACACACGGGAACCAAACCTCACTTGTGCAAATATTGTGATGCTGCCTTTACTACTTCAGGTGAACTTGTACGACATGTAAGATATCGTCACACACACGAAAAGCCTCACAAATGCAACGAGTGTGATTATGCCAGTGTGGAATTGTCAAAATTGAAGAGGCACATAAGATGTCACACTGGTGAAAGACCGTATCAGTGTCCACATTGTACATATGCCAGTCCAgacacatttaaattaaaacgacatCTGCGTATTCATACTGGGGAGAAACCTTACGAATGTGATATCTGCCAAGCATGTTTCACCCAGTCTAACAGCTTGAAGGCACACAAACTTACTCACAATGTTGGTGATAAACCCGTCTTTCAGTGTGAATTATGCCCTACGACTTGTGGGCGTAAAACAGATTTACGAATACATGTGCAAAAGTTACATACTTCAGATAAACCTTTAAAATGCAAACGCTGTGGTAAATCATTTCCCGATAGATACAGTTACAAGtTACATAATAAAACCCACGAAGGTGAGAAATGCTTCAAATGTGACTTGTGCCCATATGCGTCAATTTCTGCAAGACATTTGGAATCACACATGCTCATCCACACTGATCAGAAGCCGTTCCAATGCGACCAATGTGATCAGTCATTCCGTCAGAAACAGTTGCTCAAGAGACACATTAATCTGTACCACAACCCGTCATACATACCTCCGCCTCCACGGGAAAAGACACACGAATGCCCCGAATGCCACAGAGCTTTCCGACACAAAGGAAATCTTATTCGGCACATGGCTGTACATGATCCTGACTCCAGCATACAAGAGAAGCAATTAGCTCTCAAACTGGGAAGGCAGAAGAAGATTCAGATGATTGATGGCCAACAGGTAGAGGTAATGCCTAGCATGGGATCGGATGACGATGAAGAAGGGGATATGATGGCTGTTGGCTCTGATGGACAACAATACGTAGTTTTAGAAGTTATACAATTGGCTGATGGGGAAGAACAGGCGATGGTTGTGGATAGCCAATCAGAAATGCTAAGCGAAACAATTCTTCAAGACCATGATTTGAATGATGAAGATGTTATAAAAGCATTGCAATCGGCAAGAAGAGTGCCTAAAGTTGAAGACGAAGATGTTAAGAAAATCACCACCGATCATGATATGCAAACATGTTTTGGTTTTGATgaggaggaagaagaagaagaagatgaagatATGAGGCATGGAAAAGAAACCATCACTCTCTTAGGCATGGACTGA
Protein Sequence: MTAQFSATPIKLEGVDPSENVTEIQSYLEGFQKEIEGADGTIQQVAEIEGDDNDGDGEEGTYFVDQAGHYYYQAKGESTPVMTMVSGINDAEAGETEEFIINQENDEEGVEEDAEEGLPSEGGNNQILINNGNAYQRITVVPADTSSNELSYVLIVQQPDDKEGEQTDGDQDMTVYDFDETEEGGVIDSEAEDDKSKIVKIIPRKTQVIAQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHLCKYCDAAFTTSGELVRHVRYRHTHEKPHKCNECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICQACFTQSNSLKAHKLTHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHNKTHEGEKCFKCDLCPYASISARHLESHMLIHTDQKPFQCDQCDQSFRQKQLLKRHINLYHNPSYIPPPPREKTHECPECHRAFRHKGNLIRHMAVHDPDSSIQEKQLALKLGRQKKIQMIDGQQVEVMPSMGSDDDEEGDMMAVGSDGQQYVVLEVIQLADGEEQAMVVDSQSEMLSETILQDHDLNDEDVIKALQSARRVPKVEDEDVKKITTDHDMQTCFGFDEEEEEEEDEDMRHGKETITLLGMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01013609;
90% Identity: iTF_00741174;
80% Identity: iTF_00466686;