Meup004590.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000001.1:55834005-55844838[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-14 2.8e-10 41.6 0.0 9 72 149 217 144 220 0.94 2 2 0.15 8.7e+02 1.5 0.0 29 70 346 386 300 392 0.80
Sequence Information
- Coding Sequence
- ATGGATAAATCGGAGAGGAAGAAATCTTCtgatttaaaagaaaCCAATAAACCAGAGCACCATTTTATTGGATTTGATATTGATGATGatgtattgttaattattgaaaataaaaaaaaatCGGTAAAAATGGAACTAAGTAAAGAGACCGGCGAACCTATGGAAGTAGAAGAGCCAtccattgttaataataatcatgttaataaaaagaaacagtCTAAATCAAGTATTTCATCACCAGAACCTAATGATGTTAAGAACAATCGGAGTAATAAGAGGCATAAGAAAGACAATTTACATGATGCCTTGGAATCTTTGGAATCACAAGTTCCCCCTACTTTAGaacTTACTACACCTACTTTCAACCTTACCTCTTCTAACACTAGAACACGGCGTAGTACTGGTAGAAAAATTAATGTGGATATCAGTGATGCTATTTATAAACTTCCTTTTGAGCAcggTTGGAAACGAGAATTAGTTTACAGAACATCAGGTGAATCTACTATTCTTAATCGCGCAAATAGAAGTGGTGATGTATACTATTATTCTCCAACTAACCGAAAACTTAGATCATTACGAGAAATTCAGGAACAATTGGACATCTTATCTGATAAAGATTTAACCATAgaaagttttacatttttaaaacaaccaATTGGCATGAATGATCGATCTAAAGAACTTATCAGAGATGCAAATTCTAAATTGtctaaaGAAGACTCTTTTGTTGGTGTAGCTGTCAGACCTAAAAAGTCTAAGACACCTGTACAGCGGCCACCATTTGATTACGAACTATCAGATGATGAAAACAACAAGTCTTCAAGcaaaatgaaaattgttttcaaaaatgctAAGAGCTCTTCTAGATTGAGATCTAAAAAAGgtaaaaAATCAATGAATACATCTTCATCTACACCGGAATACATATCTGAAGACTGCCAAGCTATTCAATCTAGTGCATCACCTAAAGTTTCTTCTCCAAAACTTGAGAAAATTGAgataaataacacaataattaaaagaCGGTTGTCAACATCAGATGGTGAAGTCATTATGCAGACACCTTGTGGGATACGGTGCCCGAATAACGATGAACCTGCCACTTTAATGTGTGCTCAATGTCTGGTCTACTATCATCCAGCATGTGTCAAtttaaatgctaatttaaaaattgttggctatatatgtataaaCTGTCGATCTACTGTGCGACAAAGAAATAGACGTGTACAGTCTTCTCATACTGTGGTTGTTGGTGCTACTGAACCGGAACAACTACGTGTTGAACCAATTCGTATACGACAGGTGCATCAATCGTCAGACACACCTAACTTTTTTATTGATAGAACACCTATTTCTAAAACTGAAGAAACACAATATGAAATTGATGAATATAGTGATAATAGTGATtctgatataattaatacagttaTTTGTCAAGGAAATGTATACAAAACTACAATGGTTGATGGTAGTTTTCATGAGCAGTATGTTTATGAAATGAAACAAACACGAGGACCCAGTTTGATGACCTGTGTTATTCAAGAACCTAAAAATCTGGATgaGAATTCTGAAATGAATGGTTCTTCAAGTGAAATAGTTGTATCACCTTTCGCTTCCATGCAATCATTCAATTACATGGTTAAATCAATGCGATATGTTTTTCAACATTTGAAAACGCACGAGCTGTTATCAGCTTCTAGAGTATGTACTGCCTGGAATATAATTGCAATGAATAAATACTTAtggcAGAATGTTCGTTTAAAAAATTCTATGGTCTATGACTGGGAAAGGTTTGTAGACTCAATTGATCAACAAAGAACTGTTACATTAGACACTAGACGTATGTTGATACCCTCCAAAGTTGACGACTTCGAAAGTTTTTGGTTGCGATTTGCAAACGCAATGAAAAGAGCTCAAAAGTTAAAGGTCATTGAATTGTATAGATGTCCTGTCATTGTAGTTGAAGATATTATTTACTCATTACCTCAAATTGAAGTACTAAATGCTGCttcaataaaaaatccAAAAATGACGAAAGAGACAAAAAACCCCAATGATTTAATGTacctaaacttaaattatttggGACAAATGACAAAGCTCACAGAGTTAAGACTAAAAGGTTTAACTGGAATAAAATTGACGGCAGTGCCAtcgtttgaaaatttaatacatttgaatagATTTtCATTAACCTCTATCAAAGCATTTCCAAAAGATATCTATCAGAGTTTGAATACTATTACTGATAATATTGAGTTTTTTGAAATTGGTGATTGCGAATGCTTAACAAAGGATTTTGCCGTGTCACTAAAAAGATTTGTCAATTTGAAAACATTGAGATTAGAAAATTGCCTTAATAGATGGGATCATTCTACAAAGGATGTTTTTACTGCCATTAGAGGTCTTGAAAAGCTCAATGTTCTGGAATTGGTAAACATAGAATTCAGTAATAATGTCGAAGATGAATTGGAAAAATGTGTTGGTATTAAAGCTTTACTGATTATTCCTGCTTATGTGAGCCAAtctgcTACTACTAACTGTCACCTGATTGACTGTCTCAAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTAACTCATGAGTTACTCCGTGTTACAGACTTATTTATAACTCAATATCAACAGAACCAACATACtattggttataatttagaattatcCCATACCAAAGAAACTactaacaatatacctatactcaGAACAAGAAAGCCCCGACAGCGACCAGGAGATGAGGCTACTCCTGAAAAAGACAAGTCAGATAATGTTGATATACTTTCAGTTCCTGCTCTAGAGAAATTGTTAGATACTATGATGCCTGATGCTAAGACTAAGGTAATGAAAGTTCCCTTTTCTGGAACATGTAGAGTTTATTTGAGTGAACAGTTTAATGAtctttaa
- Protein Sequence
- MDKSERKKSSDLKETNKPEHHFIGFDIDDDVLLIIENKKKSVKMELSKETGEPMEVEEPSIVNNNHVNKKKQSKSSISSPEPNDVKNNRSNKRHKKDNLHDALESLESQVPPTLELTTPTFNLTSSNTRTRRSTGRKINVDISDAIYKLPFEHGWKRELVYRTSGESTILNRANRSGDVYYYSPTNRKLRSLREIQEQLDILSDKDLTIESFTFLKQPIGMNDRSKELIRDANSKLSKEDSFVGVAVRPKKSKTPVQRPPFDYELSDDENNKSSSKMKIVFKNAKSSSRLRSKKGKKSMNTSSSTPEYISEDCQAIQSSASPKVSSPKLEKIEINNTIIKRRLSTSDGEVIMQTPCGIRCPNNDEPATLMCAQCLVYYHPACVNLNANLKIVGYICINCRSTVRQRNRRVQSSHTVVVGATEPEQLRVEPIRIRQVHQSSDTPNFFIDRTPISKTEETQYEIDEYSDNSDSDIINTVICQGNVYKTTMVDGSFHEQYVYEMKQTRGPSLMTCVIQEPKNLDENSEMNGSSSEIVVSPFASMQSFNYMVKSMRYVFQHLKTHELLSASRVCTAWNIIAMNKYLWQNVRLKNSMVYDWERFVDSIDQQRTVTLDTRRMLIPSKVDDFESFWLRFANAMKRAQKLKVIELYRCPVIVVEDIIYSLPQIEVLNAASIKNPKMTKETKNPNDLMYLNLNYLGQMTKLTELRLKGLTGIKLTAVPSFENLIHLNRFSLTSIKAFPKDIYQSLNTITDNIEFFEIGDCECLTKDFAVSLKRFVNLKTLRLENCLNRWDHSTKDVFTAIRGLEKLNVLELVNIEFSNNVEDELEKCVGIKALLIIPAYVSQSATTNCHLIDCLKKLSKTLTHLVWGLTHELLRVTDLFITQYQQNQHTIGYNLELSHTKETTNNIPILRTRKPRQRPGDEATPEKDKSDNVDILSVPALEKLLDTMMPDAKTKVMKVPFSGTCRVYLSEQFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019029; iTF_00463345; iTF_00973045; iTF_01032891; iTF_01328635; iTF_01304857; iTF_01305555; iTF_01304188; iTF_00134270; iTF_00135322; iTF_01037791;
- 90% Identity
- iTF_00019029;
- 80% Identity
- -