Rnym017935.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000025.1:1979524-1989136[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-15 3.9e-11 42.9 0.0 9 72 157 226 153 229 0.95 2 2 0.051 3.2e+02 1.5 0.0 22 70 351 395 345 401 0.71
Sequence Information
- Coding Sequence
- ATGGATAAATTGGAGAGAAAGAAATCTGCTggtttaaaagaaACCAATAATCTTTTAAACCTAGAAGCACATTTTGTTGGAtttgatattgatgatgaagtgttgataataattgaaaataagaaaaaatCATTAAAAATGGAACTTAGTAAAGAAACAGGTGAACCTATGGAAGTAGACGAGCCAACTGATAGTCCAtccattgttaataataatcattttaataaaaagaaacaatCTAAATTAAGTAtattgtcACCAGAACCTAATGATGCTAAAAATAATCGGAGTAATAAAAGGCATAAGAAAGACAACACACGTAGTGATACCTTAGAATCTTTGGAATTACATGCTCCACCCTCTTTAGaACTTACTACTCCCACATTCAACTTAACTTCTTCTAACACTAGAACGCGCCGTAGTACAGGcagaaaaattaatgttgataTCAGTGATGCTATTTTTAAACTCCCATTTGAGCAtggaTGGAAACGAGAATTAGTATATCGAACATCAGGTGAATCTACTGTTCTTAATCGGGCAAATAGAAGTGGtgatgtatactattattctCCAAATAACCGAAAACTACGATCATTACGAGAAATTCAAGAACAATTGGATATCTCATCTGATAAAACTTCTCTTACTATTGACAGTTTTACCTTTTTAAAACAACCAATTGGCATGAATGATAGATCAAAAGAACTGATCAGAGATGCAAATTCTAAATTATCTAaggaagACTCTTTTGTTGGTGTTGCTGTTCGacctaaaaaatctaaaacaccCGTACCACGCCCACCATTTGATTATGAATTGTCAGATGATGAAAACAAAAAGTCTGCtagtaaaatgaaaattgtttttaagaaTGCAAAGACTTCCTCAAGATCAAGATCCAAAaaagggAATTCAGAATTAATGAATACATCTTCATCCACACCTGAATACATATCTGAAGACTGGCAAGCTATTCAATCTAGTGTGTCACCAAAAGTTTCTCCTAAACTTGAGAACAAAGATACAAATAACATAATCATTAAAAGACGGTTGTCAGCATCAGATGGGGAAGTCATCATGCAGACTCCTTGTGGTATACGGTGCCCTAATAGTCATGAACCTGCAACTTTAATGTGTACTCAATGTCTGGTCTACTATCATCCAGCATGTGTCAGTTTAAatgctaatttaaaaattgttggtTATGTATGTTTAaaCTGTCGATGTATTATACGAAAAAGAAATCATCATGTAATGTTAGCTAATTCTGTGATTGTTGATGCTACTGAACTGGAGCAACAACTACGTGTTGAACCGATTCGTATAAGACAAGTTCATCAAGCATCAGATACACCTAATTTCTTTATTGATAGAACACCAATTTCTAAAATTGAAGAACCACATGAAATTGATGAATGTAGTGATGAAAGTgactctaataatataaatactgttaTATGTCAaggaaatgtatataaaactaCAATGGTTGATGGTAGTTTTCACGAACAGTATGTTTATGAAATGAAACAAACACGAGGACCTAGTTTGATGACTTGTGTTGTTCAAGAGCCCAAAAATTTGGAAGAGAATTCTGAAATGAACGGTTCATATAAAGAAATTGTAACTCCTTTCGCATCCATGCAGTCATTTAACTACATGGTTAAAGCATTGAGacacgtttttaaatatttaaaaacacatgAGCTTTTATCCGCTTCTAGAGTATGTACCGCCTGGCATATAATTGCAATGAACAAGTTCTTAtggCAAAATGttcgtttaaaaaattctatGGTCTATGACTGGGAAAGGTTTGTAGACTCTATTGATCAACAGAGAAGTGATACATTAGATACTAGACGAATGTTGATACCTGTCAAAGTTGATGAATTCGAAAATTTTTGGTTGCATTTTTCCAAAGCAATGAAAAGAGCACAGAAGTTAAAATTCATTGAATTGTATAGATGTCCTACCCATGTAGTTGAAGATATTATTTACTCATTACCTCAACTTGAAGTACTTAATGCAACttcaataaaaaatccaAATGTAACAAAAGAGGCTAAAAATGCCAATGATTTTATGaccttaaacttaaattatttaggtcAAATGACAAAGCTCACTGAGTTAAGACTAAAAGGTTTAACTGGAATCAAATTAACGTCATTGCcatcatttgaaaatttaataaatttaaataaattttcatTAACCTCCATAAAATCATTTCCAAAAGACATCTGTCAGAGTTTGGATACTATTACTGATAACTTAGAATTTTTGGAAATTGGTGATTGCGATTGCTTATCAAAAGATTTTGCTGTATCACTAAAAAGATTTGTTAATTTGAAATCTTTGAGATTGGAAAATTGTTGCGGTAAATGGGATAGTTGTGCTCAAGATGTTTTTACTGTTATTAGGGGTCTTGAAAAGCTTACTATTCTGGAATTGGTAAACATAGAATTCAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGTATTAAAGCTTTACTGATTATTCCTGCTTATGTGAGCCAAtcaGCAACTACCAACTGCCACTTGATTGACTGCCTCAAGAAACTCTCCAAGACATTAACGCACTTGGTTTGGGGATTGACTCATGAACTGCTCCGTGTTACTGACTTATTTATAACTCAATATCAACAAAACCAGCATAGTATtggttataatttagaattatcCCATACCAAAGAAACGACCAATAACATACCTATACTAAGGACAAGAAAACCCAGACAACGGCCAGGAGATGAGCCTGCTCCTGAAAAGGACAAGGACAAAGACAAATCAGATAATGTTGATATACTTTCAGTTCCTGCTCTAGAGAAATTGTTAGATACAATGATGCCTGATGCTAAAACAAGGGTAATTAAGGTTCCTTTTTCGGGAACAGTTAGAGTTTATTTAAGTGAACAGTTTAATGATCtttga
- Protein Sequence
- MDKLERKKSAGLKETNNLLNLEAHFVGFDIDDEVLIIIENKKKSLKMELSKETGEPMEVDEPTDSPSIVNNNHFNKKKQSKLSILSPEPNDAKNNRSNKRHKKDNTRSDTLESLELHAPPSLELTTPTFNLTSSNTRTRRSTGRKINVDISDAIFKLPFEHGWKRELVYRTSGESTVLNRANRSGDVYYYSPNNRKLRSLREIQEQLDISSDKTSLTIDSFTFLKQPIGMNDRSKELIRDANSKLSKEDSFVGVAVRPKKSKTPVPRPPFDYELSDDENKKSASKMKIVFKNAKTSSRSRSKKGNSELMNTSSSTPEYISEDWQAIQSSVSPKVSPKLENKDTNNIIIKRRLSASDGEVIMQTPCGIRCPNSHEPATLMCTQCLVYYHPACVSLNANLKIVGYVCLNCRCIIRKRNHHVMLANSVIVDATELEQQLRVEPIRIRQVHQASDTPNFFIDRTPISKIEEPHEIDECSDESDSNNINTVICQGNVYKTTMVDGSFHEQYVYEMKQTRGPSLMTCVVQEPKNLEENSEMNGSYKEIVTPFASMQSFNYMVKALRHVFKYLKTHELLSASRVCTAWHIIAMNKFLWQNVRLKNSMVYDWERFVDSIDQQRSDTLDTRRMLIPVKVDEFENFWLHFSKAMKRAQKLKFIELYRCPTHVVEDIIYSLPQLEVLNATSIKNPNVTKEAKNANDFMTLNLNYLGQMTKLTELRLKGLTGIKLTSLPSFENLINLNKFSLTSIKSFPKDICQSLDTITDNLEFLEIGDCDCLSKDFAVSLKRFVNLKSLRLENCCGKWDSCAQDVFTVIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYVSQSATTNCHLIDCLKKLSKTLTHLVWGLTHELLRVTDLFITQYQQNQHSIGYNLELSHTKETTNNIPILRTRKPRQRPGDEPAPEKDKDKDKSDNVDILSVPALEKLLDTMMPDAKTRVIKVPFSGTVRVYLSEQFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00940496;
- 90% Identity
- iTF_01328635;
- 80% Identity
- -