Rpad007488.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000007919.1559015:575640-590395[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-14 3.6e-11 43.1 0.0 9 72 156 225 150 228 0.95 2 2 0.33 9.7e+02 0.0 0.0 29 57 354 382 335 399 0.69
Sequence Information
- Coding Sequence
- ATGGATAAATTGGAGAGAAAGAAATCTGCTGGTTTAAAAGAAACCAATAATCTTTTAAACCTAGAAGCAAATTTTATTGGATTTGATATTGATGATGAAGTATTGATAATAATTGAAAATAAGAAAAAATCATTAAAAATGGAACTTAGTAAAGAAACAGGTGAACCTATGGAAGTAGACGAGCCAACTGACAGTCCATCCATTGTTAATAATAATCATGTTAATAAAAAGAAACAATCTAAATCAAGTATATCATCACCAGAACCTAATGATGTAAAGAATAATCGAAGTAATAAGAGGCACAAGAGAGATAACACACGAAATGATACCTTAGAATCTTTGGAATTACATGTTCCGCCTTCTTTAGAACTTACTACTCCTACATTTAACTTGACTTCTAACACTAGAACGCGCCGTAGTACAGGCAGAAAAATTAATGTTGACATAACTGATGCAATTTTTAAACTCCCATTTGAGCATGGATGGAAACGAGAATTAGTATATAGAACATCAGGTGAATCTACTGTTCTCAATCGGGCAAATAGAAGTGGTGATGTATACTATTATTCTCCAAATAACCGAAAACTACGATCATTACGAGAAATTCAGGAACAGTTGGATATCTCATCTGATAAAACTTCTCTTACTATCGACAGTTTTACTTTTTTAAAACAACCAATTGGCATGAATGATAGATCAAAAGAACTGATCAGAGATGCAAATTCTAAATTATCTAAGGAAGACTCTTTTGTTGGTGTTGCTGTTCGGCCTAAAAAATCTAAAACACCTGTACAGCGCCCACCATTTGATTATGAATTGTCAGATGATGAAAACAAAAAGTCTGCTAGTAAAATGAAAATTGTTTTTAAAAATGCAAAGACTTCCTCAAGATCAAGATCCAAAAAAGGGAATTCAGAATCAATGAATACATCTTCATCCACACCTGAATATATATCTGAAGACTGGCAAGCTATTCAATCTAGTGTGTCACCAAAAGTTTCTCCTAAACTTGAGAATATTGATATAAATACCACAACCATTAAAAGACGGTTGTCAACATCAGATGGGGAAATCATCATGCAGGCTCCTTGTGGTATACGGTGCCCTAACAGTGATGAACCTGCTTCTTTAATGTGCACTCAATGTCTGGTCTACTATCATCCAGCATGTGTCAATATAAATGCTCAGTTAAAGATTGTTGGTTATGTATGTTTAAACTGTCGATCTATTGTGCAACAAAGAAATACACGTGTACAGTCATCTCATACTGTGGTTGTTGGTGCTACTGAACCTGAGCAACTACGCGTTGAACCGATTCGTATAAGACAAGTCCATCAAGCTTCAGATACTCCTAATTTCTTTATTGATAGAACGCCAATTTCTAAAATTGAAGAACCACATTATGAAATTGATGAATATAAAGATGAAAATGACCTTGATATTATAAATACTGTTATATGTCAAGGAAATGTATACAAAACTACAATGGTTGATGGCAGTTTTCATGAACAGTATGTTTATGAAATGAAACAAACACGAGGACCTAGTTTAATGACTTGTGTTGTTCAAGAGCCCAAAAATTTGGAAGAGAATTCTGAAATGAATGGTTCATTTAAAGAAATTGCAACTACTTTCTCATCCATGCAATCATTCAACTACATGGTTAAAGCATTGAGACACGTTTTTAAATATTTAAAAACACATGAGCTTTTATCTGCTTCTAGAGTATGTACCGCGTGGCATATAATTGCAATGAACAAGTTCTTATGGCAAAATGTTCGTTTAAAAAATTCTATGGTCTATGACTGGGAAAGGTTTGTAGACTCTATTGATCATCAAAGAACTGATACTTTAGATACTAGACGTATGTTAATACCTATAAAAGTTGAAGAATTCGAAAATTTTTGGTTGCATTTTTCCAAAGCAATGAAAAGAGCACAGAAATTAAAATTCATTGAATTGTATAGATGTCCTACCCATGTAGTTGAAGATATTATTTACTCATTACCTCAAATTGAAGTACTTAATGCAACTTCAATAAAAAATCCAAATGTAACAAAAGAGGCCAAAAATCCCAATGATTTTATGGCCCTAAGCTTAAATTATTTAGGCCAAATGACAAAGCTCACTGAGTTAAGACTAAAAGGTTTAACTGGAATCAAATTAACGTCATTGCCATCATTTGAAAATTTAATTAATTTAAATAAATTTTCATTAACTTCCATAAAATCATTTCCAAAAGACATCTATCAGAGTTTGGATACTATTACTGAAAACATAGAGTTTTTGGAAATTGGCGATTGCGATTGCTTATCAAAAGATTTTGCTGTGTCACTAAAAAGATTTGTCAATTTGAAATCGTTGAGATTGGAAAATTGTTGTGGTAAATGGGACAGTTGTGCACAAGATGTTTTTACTGCTATTAGGGGTCTTGAAAAGCTCACTATTTTGGAATTGGTCAACATAGAATTCAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGTATTAAAGCTTTACTGATTATTCCTGCTTATGTGAGCCAATCTGCAACTACCAACTGCCACTTGATTGACTGTCTCAAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTGACTCATGAATTACTCCGTGTTACTGACTTATTTATAACTCAATATCAACAAAATCAGCATAGTATTGGTTATAATTTAGAATTATCCCATACCAAAGAAACGACCAACAACATACCTATACTAAGGACAAGAAAACCCAGACAGCGACCAGGAGAAGAGTCGGCTCCCGAAAAGGACAAGGACAAAGACAAATCAGATAACGTTGATATACTTTCAGTTCCTGCTCTAGAGAAATTGTTAGATACAATGATGCCTGATGCTAAAACTAGGGTAATTAAGGTTCCCTTTTCAGGAACAGTTAGAGTTTATTTGAGTGAACAGTTTAATGATCTTTGA
- Protein Sequence
- MDKLERKKSAGLKETNNLLNLEANFIGFDIDDEVLIIIENKKKSLKMELSKETGEPMEVDEPTDSPSIVNNNHVNKKKQSKSSISSPEPNDVKNNRSNKRHKRDNTRNDTLESLELHVPPSLELTTPTFNLTSNTRTRRSTGRKINVDITDAIFKLPFEHGWKRELVYRTSGESTVLNRANRSGDVYYYSPNNRKLRSLREIQEQLDISSDKTSLTIDSFTFLKQPIGMNDRSKELIRDANSKLSKEDSFVGVAVRPKKSKTPVQRPPFDYELSDDENKKSASKMKIVFKNAKTSSRSRSKKGNSESMNTSSSTPEYISEDWQAIQSSVSPKVSPKLENIDINTTTIKRRLSTSDGEIIMQAPCGIRCPNSDEPASLMCTQCLVYYHPACVNINAQLKIVGYVCLNCRSIVQQRNTRVQSSHTVVVGATEPEQLRVEPIRIRQVHQASDTPNFFIDRTPISKIEEPHYEIDEYKDENDLDIINTVICQGNVYKTTMVDGSFHEQYVYEMKQTRGPSLMTCVVQEPKNLEENSEMNGSFKEIATTFSSMQSFNYMVKALRHVFKYLKTHELLSASRVCTAWHIIAMNKFLWQNVRLKNSMVYDWERFVDSIDHQRTDTLDTRRMLIPIKVEEFENFWLHFSKAMKRAQKLKFIELYRCPTHVVEDIIYSLPQIEVLNATSIKNPNVTKEAKNPNDFMALSLNYLGQMTKLTELRLKGLTGIKLTSLPSFENLINLNKFSLTSIKSFPKDIYQSLDTITENIEFLEIGDCDCLSKDFAVSLKRFVNLKSLRLENCCGKWDSCAQDVFTAIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYVSQSATTNCHLIDCLKKLSKTLTHLVWGLTHELLRVTDLFITQYQQNQHSIGYNLELSHTKETTNNIPILRTRKPRQRPGEESAPEKDKDKDKSDNVDILSVPALEKLLDTMMPDAKTRVIKVPFSGTVRVYLSEQFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00940496;
- 90% Identity
- iTF_01328635;
- 80% Identity
- -