Sgrm020395.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001434.1:355840-364570[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-14 1.2e-10 41.4 0.0 9 72 111 179 105 182 0.94 2 2 0.13 8.4e+02 0.2 0.0 26 57 307 336 287 353 0.69
Sequence Information
- Coding Sequence
- atggaACTTAGTAAAGAATCAGGTGAACCTATGGAAGTAGACGAGCCAACTGACAGTCCAtccattgttaataataatcatgttaataaaaagaaacaatCTAAATCAAGTAtatcatCACCAGAACCTAATGATGTAAAGAATAATCGGAGTAATAAGAGGCATAAGAAAGACAACACACACAGTGATACCTTAGAATCTTCAGAATTACATGTTCCGCCTTCTTTAGaacTTACTACTCCTACATTCAACTTAACTTCTTCTAACACTAGAATGCGGCGTAGTTCAGGCAGAAAAATTAATGTTGATATCACTGATGCTATTTTTAAACTTCCATTTGAGCAtggaTGGAAACGAGAATTAGTATATAGAACATCAGGTGAATCTACTGTTCTCAATCGGGCAAATAGAAGTGGTgatgtatactattattctCCTAATAACCGAAAACTAAGATCATTACGAGAAATTCAGGAACAATTGGATATCTCATCTGATAAAACTCTTACTATTGaaagttttacttttttaaaacaacCAATTGGCATGAATGATAGATCAAAAGAACTGATCAGAGATGCAAATTCTAAATTATCTAAGGAAGACTCTTTTGTTGGTGTTGCTGTTCGacctaaaaaatctaaaacaccTGTACAGCGCCCACCATTTGATTATGAATTGTCAGATGATGAAAACAAAAAGTCTGTtagtaaaatgaaaattgtttttaaaaatgcgaAGACTTCCTCAAGATCAAGATCCAAAaaaggAAATTCAGAATTAATGAATACATCTTCATCCACACCTGAATACATATCTGAAGACTGGCAAGCTATTCAATCTAGTGTGTCGCCAAAAGTTTCTCCTAAACTTgagaatattgatttaaataccaCAACCATTAAAAGACGGTTGTCAACATCAGATGGGGAAATCATCATGCAGGCTCCTTGTGGTATACGGTGCCCTAACAGTGATGAACCTGCCTCTTTAATGTGCACTCAATGTCTGGTCTACTATCATCCAGCCTGTGTCAATATAAATgctcaattaaaaattgttggtTATGTATGTTTAaaCTGTCGATCTATTATACAACAAAGAAATACACATGTACAGTCATCTCATACTGTGGTTGTTGGTGCTACTGAACCGGAGAAACTACGCGTTGAACCGATTCGTATAAGACAAGTTCATCAAGCATCAGATACACCTAATTTCTTTATTGATAGAACACCAATTTCTAAAATTGAAGAACCACATTTTGAAATTGATGAATATAGAGATGAAAATAATGACcttgatataaaaaatactgttataTGTCAAGGAAATGTATACAAAACTACAATGGTTGATGGCAGTTTTCACGAACAGTATGTTTATGAAATGAAACAAACACGAGGACCTAGTTTGATGACTTGTGTTATTCAAGAGCCCAAAAATTTGGAAgaGAATTCTGAGATGAATGGTTCATTTAAAGTAAATTCATCTACTTTCACATCCATGCAATCAGTCAACTACATGGTTAAATCATTAAGACacgtttttgaatatttaaaaacacatgaGCTTTTATCTGCTTCTAGAGTATGTACCTCTTGGAATTTAATTGCAATGAACAAGTTCTTAtggcAAAATGTTCGTTTAAAAAATTCTATGGTCTATGACTGGGAAAGATTTGTAGACTCTATTGATAATCAAAGAACTGATACTTTAGATACTAGACGAATGTTGATACCTACAAAAGTtgatgaatttgaaaatttttggtTGCGTTTTTCCAAAGCAATGAAAAGAgcacaaaagttaaaatttattgaattgtatAGATGTCCTACCCATGTAGTTGAAGATATTATTTACTCATTACCTCAAATTGAAGTACTTAATGCAACTTcaataaaaaatccaAATGTAACAAAAGAGGCGAAAAATCCCAATGATTTTATGGCTCTAAGCTTAAATTATTTAGGCCAAATGACAAAGCTTACTGAGTTAAGACTAAAAGGTTTAACTGGAATCAAATTAACGTCATTGCCatcatttgaaaatttagtaaatttaaataaattttcattAACTTCCATAAAATCATTTCCCAAAGACATCTATCAGAGTTTGAATACTATTACTGATAACATAGAGTTTTTGGAAATTGGTGATTGCGATTGCTTATCAAAAGATTTTGCTGTGTCACTAAACAGATTTATCAATTTGAAATCATTGAGATTGGAAAATTGTTGCGGTAAATGGGACAGTTGTGCACAAGATGTTTTTACTGCTATTAGGGGTCTTGAAAAACTTACTATTCTGGAATTGGTCAACATAGAATTTAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGTATTAAAGCTTTACTGATTATTCCTGCTTATGTGAGCCAaTCTGCAACTACAAACTGCCATTTAATTGACTGCCTCAAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTGACTCATGAATTACTCCGTGTTACTGACTTATTTATAACTCAATATCAACAAAACCAGCATAGTATTggttataatttagaattatccCATACCAAAGAAACAACCAACAACATACCTATTCTAAGGACAAGAAAACCCAGACAGCGACCAGGAGAAGAGTCTGCTTCCGAAAAGGACAAGGATAAAGACAAATCAGATAACgTTGGagatattaataacattttaaattattag
- Protein Sequence
- MELSKESGEPMEVDEPTDSPSIVNNNHVNKKKQSKSSISSPEPNDVKNNRSNKRHKKDNTHSDTLESSELHVPPSLELTTPTFNLTSSNTRMRRSSGRKINVDITDAIFKLPFEHGWKRELVYRTSGESTVLNRANRSGDVYYYSPNNRKLRSLREIQEQLDISSDKTLTIESFTFLKQPIGMNDRSKELIRDANSKLSKEDSFVGVAVRPKKSKTPVQRPPFDYELSDDENKKSVSKMKIVFKNAKTSSRSRSKKGNSELMNTSSSTPEYISEDWQAIQSSVSPKVSPKLENIDLNTTTIKRRLSTSDGEIIMQAPCGIRCPNSDEPASLMCTQCLVYYHPACVNINAQLKIVGYVCLNCRSIIQQRNTHVQSSHTVVVGATEPEKLRVEPIRIRQVHQASDTPNFFIDRTPISKIEEPHFEIDEYRDENNDLDIKNTVICQGNVYKTTMVDGSFHEQYVYEMKQTRGPSLMTCVIQEPKNLEENSEMNGSFKVNSSTFTSMQSVNYMVKSLRHVFEYLKTHELLSASRVCTSWNLIAMNKFLWQNVRLKNSMVYDWERFVDSIDNQRTDTLDTRRMLIPTKVDEFENFWLRFSKAMKRAQKLKFIELYRCPTHVVEDIIYSLPQIEVLNATSIKNPNVTKEAKNPNDFMALSLNYLGQMTKLTELRLKGLTGIKLTSLPSFENLVNLNKFSLTSIKSFPKDIYQSLNTITDNIEFLEIGDCDCLSKDFAVSLNRFINLKSLRLENCCGKWDSCAQDVFTAIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYVSQSATTNCHLIDCLKKLSKTLTHLVWGLTHELLRVTDLFITQYQQNQHSIGYNLELSHTKETTNNIPILRTRKPRQRPGEESASEKDKDKDKSDNVGDINNILNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00940496;
- 90% Identity
- iTF_01304857; iTF_01305555; iTF_01304188;
- 80% Identity
- -