Lhir011295.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947563715.1
- Location
- OX387376.1:20941897-20961342[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-75 2e-70 238.1 23.4 1 297 123 406 123 409 0.90 2 2 0.32 9.2e+03 -3.7 9.8 127 169 428 470 414 483 0.46
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCAGAAGTGGCCACGCCTGATAACAGCGATGAGGAGAGCGGGGACGCCTTCACCGATGGAGACTTCGGAGATTCCGATGACGAGGCCATTCTCGCACGCAACGACAACAAGTCTTCCAATATCCCCGTCAACGAGACGGTCAATGAAGAGGTTGATAAGACACTAACTAACGGCAACTGCTCTCACGATGGACATGAAGCATCTCCTGAAGAACAACCCAAAGTTAACGGACATAAAAACAGTGACACTCAAAGTGATGTGGAAAATTATAGTGCGACATCGGATATGAGAAGAGATTCACATGGAGACCAGAATCCTTCAATTGTGGGGATTCTAGGAGACCAGCATAGTCATGCGGAGCAACGTCTGGCAGCGAGGCGAGCGGCCCGCGCGGAGGCGCGCGAGATACGCATGCGGGAACTTGAGCGGCAGCAGCGGGAACAGGAGGACCATGCTGACAAGGCGTATGACATGTATGCAGAGACCGTGGGGCGGCGCGGCGGCACGCGACTCGCTGCGCTCAGTCCCGCCGCCAGTTTGGCGCACTCGCCCCGACGGAGCTCCGAGGACGCGGCAGATGACACCTTTAACGTTAAGGACTTAAGGCACGAGTTGAAAGAAGTGGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAGCTCCTCAAGGACCGCATCCTCGAGCTGCAGGAGGAATACGCGCAACTACAGCGCGAGCACCGCGAGAAGTGTTCTGCGCACGAGCGTCTACGGCGCGAGCACGTGTCGACGGAGCGCGAGCTGTGCTGCGCGCGGGACGCGGTCCGCGCGCGGGACTCCGCCGCCGCAGCCGCGGGCTTCGCCTTCGCGGAGGCGGCGCCCGGCGCCACGCACGCCGAGGGCTTCGGTGCCGTGCCGCCGCTTGCGCTGCTCTCACAGGAACAGGAGAGGGCGCTCGCCGACCAGGGCGAAGGCACGCTCGACGTGCGGTTGCAGAAGCTGGTGAGCGCGAAGACCGCCCTCGAGTCCGAGGTTCGCAAGTTGAAGCTGACGCTGAACGAGGAGCGCGCCGCCAGGCAGAACGGCGTCGTCAACCAACACGACGCAGACTACGAGAACGAACTGGAGAGTCTCCGCAAGTGCGTGTCGGAAGCGAAGGGTCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAAGCGGCCGGTGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGCGCCAGGACGCCACCGACGAGCGCGAGGAACAGCTCAAACAGGAGCGGCGCAAGCTGCAGCGGGAGGCGCGAGAAGCTCTGAACCGAGTGGAAGAACTGGAGACTGAGAACAGCCACCTCACGAAGAGACTCGACAAACTCAAGAACGCCAAGTCGGCGCTACTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGDAFTDGDFGDSDDEAILARNDNKSSNIPVNETVNEEVDKTLTNGNCSHDGHEASPEEQPKVNGHKNSDTQSDVENYSATSDMRRDSHGDQNPSIVGILGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAASLAHSPRRSSEDAADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEYAQLQREHREKCSAHERLRREHVSTERELCCARDAVRARDSAAAAAGFAFAEAAPGATHAEGFGAVPPLALLSQEQERALADQGEGTLDVRLQKLVSAKTALESEVRKLKLTLNEERAARQNGVVNQHDADYENELESLRKCVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEREEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- iTF_00207010; iTF_00206088; iTF_00143083; iTF_00033822; iTF_00032929; iTF_00666553;
- 80% Identity
- -